Factsheet for Zm00001d017563_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31083	Sorghum	nucleus	79.48	85.94
Zm00001d048448_P001	Maize	nucleus	15.03	44.83
Zm00001d002649_P001	Maize	nucleus	36.71	38.72
Zm00001d026106_P001	Maize	nucleus	38.15	38.48
Zm00001d046981_P001	Maize	nucleus	17.92	29.38
Zm00001d036638_P001	Maize	nucleus	19.65	25.56
HORVU6Hr1G064920.1	Barley	mitochondrion	15.9	23.31
HORVU0Hr1G016420.1	Barley	mitochondrion	15.9	23.31
Zm00001d041376_P001	Maize	nucleus	10.12	22.73
TraesCS6D01G236000.1	Wheat	mitochondrion	19.08	21.71
TraesCS6A01G254700.1	Wheat	nucleus	18.21	20.79
TraesCS6B01G270800.1	Wheat	nucleus	18.21	19.81
Zm00001d030911_P001	Maize	cytosol	9.54	18.54
Zm00001d005087_P001	Maize	nucleus	18.5	18.39
Zm00001d027492_P001	Maize	mitochondrion	21.39	17.05
Zm00001d049511_P001	Maize	nucleus	14.45	14.41
Zm00001d024532_P001	Maize	nucleus	14.16	13.76
Zm00001d016175_P001	Maize	nucleus	20.81	13.33
Zm00001d051527_P001	Maize	cytosol, nucleus, peroxisome, plastid	14.45	13.33
Zm00001d017702_P001	Maize	peroxisome	14.45	13.16
Zm00001d046174_P001	Maize	nucleus	19.65	12.81
Zm00001d033310_P001	Maize	nucleus	15.9	12.76
Zm00001d013187_P001	Maize	plastid	14.16	12.63
Zm00001d037015_P001	Maize	nucleus	19.36	12.09
Zm00001d034181_P001	Maize	plastid	13.01	11.54
Zm00001d032249_P002	Maize	plastid	14.74	10.58
Zm00001d020384_P001	Maize	nucleus	14.74	10.08
Zm00001d020382_P001	Maize	nucleus, plastid	2.31	7.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A1D6HFP1	ProteinID:AQK73451.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF6	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0008436992	EnsemblPlantsGene:Zm00001d017563	EnsemblPlants:Zm00001d017563_P002	EnsemblPlants:Zm00001d017563_T002	SEG:seg	:

Description

G2-like-transcription factor 20Putative Myb family transcription factor

Coordinates

chr5:+:199683772..199686910

Molecular Weight (calculated)

37433.6 Da

IEP (calculated)

11.183

GRAVY (calculated)

-0.520

Length

346 amino acids

Sequence
(BLAST)

001: MGGAGGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDKATP KLILQLMDVG GLTIAHVKSH LQMYRSSGQD IRRREVQPRR LGHLVEHYSF
101: AIDEEGGPKE FVCCPHMKRM IKIPNLWHTH RLLPARVNRA EAGPEAAATA TATHESVQGN SDMGAPGTRR CGDDYTRAIP IPMGSSSSRS RRITEGLAWQ
201: WQSSGAASAA RAATAASTLR ELGFWVRGTE PFKVRQTGRP MANRLSPVAR QLSSKSKEIK CGDDGRFLFG TATRDEAARR HSPSRRPDSI DPKAVAAVSW
301: SSEGGACALP PPLSSTGLSA RSGPSGSCVF ARQRVNLDLS LSICGS

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.