Factsheet for Zm00001d020384_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020382_P001	Maize	nucleus, plastid	21.15	100.0
KXG35581	Sorghum	nucleus	90.51	87.57
HORVU5Hr1G060310.22	Barley	nucleus	72.33	82.43
TraesCS5D01G209600.1	Wheat	nucleus, plastid	71.94	81.07
TraesCS5B01G201900.1	Wheat	nucleus, plastid	72.13	80.93
TraesCS5A01G203200.1	Wheat	nucleus	71.94	80.35
Os09t0395300-01	Rice	nucleus	57.31	76.92
Zm00001d041376_P001	Maize	nucleus	13.04	42.86
KRG97985	Soybean	nucleus	39.33	41.81
KRH74367	Soybean	nucleus	22.73	41.67
Zm00001d030911_P001	Maize	cytosol	14.62	41.57
KRH30907	Soybean	nucleus	41.11	41.19
PGSC0003DMT400034663	Potato	nucleus	35.57	40.0
Solyc11g011770.1.1	Tomato	nucleus	36.17	39.61
Zm00001d032249_P002	Maize	plastid	36.76	38.59
Zm00001d024532_P001	Maize	nucleus	26.28	37.36
Zm00001d048448_P001	Maize	nucleus	8.5	37.07
Zm00001d049511_P001	Maize	nucleus	25.3	36.89
Bra023254.1-P	Field mustard	nucleus	26.48	36.61
Bra033844.1-P	Field mustard	nucleus	27.67	35.71
AT1G32240.1	Thale cress	nucleus	26.88	35.05
KRH39575	Soybean	nucleus	26.88	34.87
Zm00001d017702_P001	Maize	peroxisome	21.34	28.42
Zm00001d051527_P001	Maize	cytosol, nucleus, peroxisome, plastid	20.75	28.0
Zm00001d034181_P001	Maize	plastid	18.97	24.62
Zm00001d013187_P001	Maize	plastid	18.58	24.23
Zm00001d033310_P001	Maize	nucleus	18.38	21.58
Zm00001d046981_P001	Maize	nucleus	8.7	20.85
Zm00001d036638_P001	Maize	nucleus	9.09	17.29
Zm00001d005087_P001	Maize	nucleus	11.26	16.38
Zm00001d002649_P001	Maize	nucleus	9.68	14.94
Zm00001d017563_P002	Maize	nucleus	10.08	14.74
Zm00001d026106_P001	Maize	nucleus	8.89	13.12
Zm00001d037015_P001	Maize	nucleus	13.83	12.64
Zm00001d027492_P001	Maize	mitochondrion	10.47	12.21
Zm00001d046174_P001	Maize	nucleus	12.45	11.86
Zm00001d016175_P001	Maize	nucleus	11.86	11.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A1D6I3X2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0010158	GO:GO:0010229	GO:GO:0030154
InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	ProteinID:ONM54839.1	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF11
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001BA4775	EnsemblPlantsGene:Zm00001d020384	EnsemblPlants:Zm00001d020384_P001
EnsemblPlants:Zm00001d020384_T001	SEG:seg	:	:	:	:

Description

milkweed pod1 milkweed pod1

Coordinates

chr7:-:110525083..110531709

Molecular Weight (calculated)

51544.9 Da

IEP (calculated)

7.685

GRAVY (calculated)

-0.486

Length

506 amino acids

Sequence
(BLAST)

001: MKRGETAGWE LQASCDQERG ASAEGRRRAM EASSAASPDL SLHISLPSSA AGSGPSGRRA AVGGGTGGGG GAGGDPWRRL NGSTASTELS LSPPVEQEHA
101: DALPWRHRPS AAAASSAATT SAGATLMPAM PMLQPLDGGG GLGAGAGAGG GASVALPIRG IPIYNGPGGF PFLPPASGAD GAPLHHHQQQ QKLGFYGSYH
201: PSTWPSSLGS TSPSPSPLAP GTPPSPLLDP ASAAFLSPAA HHHHRMLSAS GRLNGMLTDT LRGYGAGGVG GLGGIVGGHH HHHHHLHGAQ PFGLGSRFMP
301: KLPAKRSMRA PRMRWTSTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKSTDK PAASSGANDG GSGDEDFAGG GQAGSGGENM
401: CARPFGEHRS TSEGAASSVG GGGGGDMDQS SAGNGSTRWS NSSRDPWLSS NSCNMDAHRL AALSSPIENG EPCRSSSSQV SNQELMSSPS LEFTLGRPDW
501: QGTDHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.