Factsheet for TraesCS5D01G209600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G201900.1	Wheat	nucleus, plastid	99.33	98.89
HORVU5Hr1G060310.22	Barley	nucleus	95.99	97.07
TraesCS5A01G203200.1	Wheat	nucleus	97.77	96.91
Os09t0395300-01	Rice	nucleus	63.7	75.86
Zm00001d020384_P001	Maize	nucleus	81.07	71.94
KXG35581	Sorghum	nucleus	80.62	69.22
KRG97985	Soybean	nucleus	43.21	40.76
KRH30907	Soybean	nucleus	44.77	39.8
KRH74367	Soybean	nucleus	24.28	39.49
PGSC0003DMT400034663	Potato	nucleus	39.42	39.33
Solyc11g011770.1.1	Tomato	nucleus	39.64	38.53
TraesCS6D01G011600.1	Wheat	nucleus	28.06	37.95
TraesCS7D01G294400.1	Wheat	nucleus	26.95	34.87
Bra023254.1-P	Field mustard	nucleus	28.06	34.43
Bra033844.1-P	Field mustard	nucleus	28.95	33.16
AT1G32240.1	Thale cress	nucleus	28.51	32.99
KRH39575	Soybean	nucleus	28.51	32.82
TraesCS6D01G248300.1	Wheat	cytosol, nucleus, peroxisome, plastid	23.16	29.13
TraesCS5D01G075600.1	Wheat	nucleus	22.05	28.86
TraesCS4D01G071300.1	Wheat	nucleus	21.38	25.88
TraesCS5D01G412800.1	Wheat	mitochondrion, plastid	21.6	25.73
TraesCS7D01G457600.1	Wheat	nucleus	10.47	19.03
TraesCS7D01G457300.1	Wheat	nucleus	10.24	18.4
TraesCS7D01G457500.1	Wheat	nucleus	10.02	18.29
TraesCS7D01G457400.1	Wheat	nucleus	10.02	17.93
TraesCS6D01G236000.1	Wheat	mitochondrion	11.8	17.43
TraesCS2D01G400100.2	Wheat	mitochondrion, nucleus	10.91	16.78
TraesCS5D01G158300.1	Wheat	nucleus	12.03	16.67
TraesCS4D01G131500.1	Wheat	nucleus	12.47	16.42
TraesCS1D01G205800.1	Wheat	nucleus	11.36	14.49
TraesCS6D01G098200.1	Wheat	nucleus	13.59	12.84
TraesCS4D01G320400.1	Wheat	nucleus	12.03	12.59
TraesCS7D01G334100.1	Wheat	nucleus	12.92	11.22

Protein Annotations

EnsemblPlants:TraesCS5D01G209600.1	EnsemblPlantsGene:TraesCS5D01G209600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	InterPro:SANT/Myb	PANTHER:PTHR31496	PANTHER:PTHR31496:SF11
PFAM:PF00249	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:

Description

No Description!

Coordinates

chr5D:+:317146239..317151330

Molecular Weight (calculated)

45881.4 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.449

Length

449 amino acids

Sequence
(BLAST)

001: MEASSAASPD LSLHISLPST GPPTGPGGGG GGRGPVGGGG GDPWRRLNGS TASTELSLSP PLLAADQEGA ALPWRHRPSS SAAASSAATT SAQAALMTMP
101: MLQPLDAGVG GASAAPPIRG IPIYNGAGGF PFLPPAPGGG EGHHLPKVGF YGYHHPAAWP SSLGSTSPSS LGPGPAPPAN SFDPTAAFLS SAAHHRMLSA
201: SGRLNGMLSD TLRSYGAPGG GVGMGLGGHH HHLHGAQPFG LGSRFMPKLP AKRSMRAPRM RWTSTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA
301: HVKSHLQMYR TVKSTDKPAA SGPTDGGSGD DDFPSAGGQA GSGGDNNMCP RPFPEHRSTS EGAASSVGGD MDQSSAGNAS TRWSNSSRDP WVSSNSCNMD
401: AHRSIGLSSP MENMEPCRST GSQVSNHELS SPSLEFTLGR PDWHGADHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.