Factsheet for Os09t0395300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 18594992

gfp PMID: 18594992 doi

S Yan, CJ Yan, XH Zeng, YC Yang, YW Fang, CY Tian, YW Sun, ZK Cheng, MH Gu

The Key Laboratory of Plant Functional Genomics, Ministry of Education of China, Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, 12 East Wenhui Road, Jiangsu 225009, People's Republic of China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060310.22	Barley	nucleus	76.92	65.32
TraesCS5A01G203200.1	Wheat	nucleus	77.45	64.46
TraesCS5D01G209600.1	Wheat	nucleus, plastid	75.86	63.7
TraesCS5B01G201900.1	Wheat	nucleus, plastid	76.13	63.64
Zm00001d020384_P001	Maize	nucleus	76.92	57.31
KXG35581	Sorghum	nucleus	76.92	55.45
Os08t0426866-00	Rice	nucleus	50.13	40.38
PGSC0003DMT400034663	Potato	nucleus	42.71	35.78
Solyc11g011770.1.1	Tomato	nucleus	42.97	35.06
KRG97985	Soybean	nucleus	44.03	34.87
KRH30907	Soybean	nucleus	45.89	34.26
KRH74367	Soybean	nucleus	24.4	33.33
Os08t0160300-00	Rice	nucleus	29.44	32.17
Bra023254.1-P	Field mustard	nucleus	30.5	31.42
Os03t0624000-00	Rice	nucleus	14.59	30.22
AT1G32240.1	Thale cress	nucleus	31.03	30.15
Bra033844.1-P	Field mustard	nucleus	31.3	30.1
KRH39575	Soybean	nucleus	30.24	29.23
Os02t0696900-00	Rice	plasma membrane	23.34	23.85
Os11t0106100-00	Rice	nucleus	13.26	23.47
Os03t0766500-01	Rice	mitochondrion	23.08	22.19
Os06t0670300-01	Rice	nucleus	12.2	17.97
Os12t0105600-01	Rice	nucleus	13.79	16.56
Os04t0566600-01	Rice	extracellular	13.26	16.34
Os06t0543200-01	Rice	nucleus	15.92	11.05
Os12t0591600-01	Rice	nucleus	5.84	11.0
Os02t0241200-00	Rice	nucleus	15.65	10.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A0N7KQR2	ProteinID:BAT07930.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0010158	GO:GO:0010229
GO:GO:0030154	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	EnsemblPlantsGene:Os09g0395300	EnsemblPlants:Os09t0395300-01
PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF11	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00018302DB	SEG:seg	:	:	:	:

Description

ROLLED LEAF 9GARP DNA-binding protien, Leaf polarity modeling (Os09t0395300-01)

Coordinates

chr9:+:13759598..13765052

Molecular Weight (calculated)

38827.3 Da

IEP (calculated)

7.713

GRAVY (calculated)

-0.434

Length

377 amino acids

Sequence
(BLAST)

001: MAPMMLQPLD AGGGASAPPP PIRGIPIYNG PGGFPFLQPS PTAGDVGHHH HHHPKMGFYS SYHHPSTWPS TSPSPLAAPP GAASSPLDPT AAFLSSPHHR
101: MLSAASGRLN GMLSVSDTLR SYGVPGAAAP GVIGGAHHHH HHLHGGQPFV GALASRFMPK LPAKRSMRAP RMRWTSTLHA RFVHAVELLG GHERATPKSV
201: LELMDVKDLT LAHVKSHLQM YRTVKSTDKP AASSGPADGG SGDEEFAGGG QAASGGGDSM CLRGGGGGGV AAAAFAEHGR SASEGAASSV GGGGGGDMDQ
301: SSAGNTSTTR WSNSSRDPWL SSNSCNMDAH RSVGLSSPIE NLEPCRSSSS QVSNHELSSP SLEFTLGRPD WHGADHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.