Factsheet for Os04t0566600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11274	Sorghum	nucleus	65.03	63.78
HORVU2Hr1G095530.2	Barley	nucleus	58.5	59.67
TraesCS2D01G400100.2	Wheat	mitochondrion, nucleus	56.86	59.59
TraesCS2B01G420900.1	Wheat	mitochondrion, nucleus	56.54	59.04
TraesCS2A01G402700.1	Wheat	nucleus	56.86	58.78
Zm00001d002649_P001	Maize	nucleus	60.13	56.1
Zm00001d026106_P001	Maize	nucleus	61.11	54.52
Os11t0106100-00	Rice	nucleus	19.93	28.64
Os06t0670300-01	Rice	nucleus	23.2	27.73
Os12t0105600-01	Rice	nucleus	20.91	20.38
Os03t0624000-00	Rice	nucleus	10.46	17.58
Os08t0160300-00	Rice	nucleus	16.01	14.2
Os06t0543200-01	Rice	nucleus	25.16	14.18
Os02t0241200-00	Rice	nucleus	24.51	13.76
Os03t0766500-01	Rice	mitochondrion	16.99	13.27
Os09t0395300-01	Rice	nucleus	16.34	13.26
Os02t0696900-00	Rice	plasma membrane	13.73	11.38
Os08t0426866-00	Rice	nucleus	16.34	10.68
Os12t0591600-01	Rice	nucleus	4.58	7.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:4336691	EMBL:AK101849	ProteinID:BAF15496.1	ProteinID:BAS90535.1
ProteinID:CAD41286.1	ProteinID:EAZ31664.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	EnsemblPlantsGene:Os04g0566600	EnsemblPlants:Os04t0566600-01	PFAM:PF00249	PANTHER:PTHR31314	PANTHER:PTHR31314:SF6
UniProt:Q7XUI6	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00001B0FFD	RefSeq:XP_015634437.1
SEG:seg	:	:	:	:	:

Description

Homeodomain-like containing protein. (Os04t0566600-01)

Coordinates

chr4:+:28470386..28474272

Molecular Weight (calculated)

32745.3 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.371

Length

306 amino acids

Sequence
(BLAST)

001: MGSGGGGCGR NGAVRQYIRS KVPRLRWTGE LHCSFVQAIE FLGGQDKATP KLILQLMGVK GLTISHVKSH LQMYRCSRLG SHGTGRRSEM QPQLQRKHSC
101: GADEQVPREF LCPPLKRTRM GTEATYKGMQ GSQGISEMRT TGTQYCIDDY MQAMAMERRI KEEGLRWQRD AAAAAAADGG AAASNLQTVG CSVQESDPFK
201: IIKPEVHHLG PVLKLQCSKV ENSGFISSST GTAARDQPEP PPLEKCSLSL SLGPDPKCMP AIASSPSESS CILSSSSRSF SDCSGNSGCL VAPGVNLELS
301: MSICGS

Best Arabidopsis Sequence Match ( AT1G14600.1 )
(BLAST)

001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS

Arabidopsis Description

Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.