CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002649_P001	Maize	nucleus	79.17	75.3
Zm00001d026106_P001	Maize	nucleus	79.17	72.01
Os04t0566600-01	Rice	extracellular	63.78	65.03
TraesCS2D01G400100.2	Wheat	mitochondrion, nucleus	55.77	59.59
TraesCS2A01G402700.1	Wheat	nucleus	56.41	59.46
TraesCS2B01G420900.1	Wheat	mitochondrion, nucleus	54.49	58.02
HORVU2Hr1G095530.2	Barley	nucleus	54.81	57.0
KXG31083	Sorghum	nucleus	43.59	42.5
OQU76857	Sorghum	nucleus	19.55	23.83
KXG40258	Sorghum	nucleus	23.4	17.98
EES09087	Sorghum	nucleus	20.19	17.36
EES15503	Sorghum	nucleus	19.87	16.94
EES04827	Sorghum	nucleus	22.76	13.37
OQU76531	Sorghum	nucleus	21.79	13.28
EER91215	Sorghum	nucleus	17.95	13.11
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	14.74	12.43
EER93393	Sorghum	mitochondrion, plastid	14.42	11.78
EES13398	Sorghum	nucleus	13.14	10.9
OQU79478	Sorghum	nucleus	15.71	10.61
KXG25180	Sorghum	nucleus	15.06	9.89
KXG35581	Sorghum	nucleus	15.71	9.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:C5YE21	EnsemblPlants:EES11274	ProteinID:EES11274	ProteinID:EES11274.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31314	PANTHER:PTHR31314:SF6	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3006G181600	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0001A86D23	RefSeq:XP_002446946.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:53639443..53642963

Molecular Weight (calculated)

33252.7 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.409

Length

312 amino acids

Sequence
(BLAST)

001: MGSGGGGRNG AVARRYIRSK EPRMRWSADL HRSFLQAIDC LGGQHKATPK LILQFMGVKE LTISHVKSHL QMHRAARLGA GRGGPGMQRR HSCTGDEQGP
101: KEEEFLCPPP PLKRVRMGYD ESMQGSHGVS DARTTAAAAG GLYCIDDYMQ AMASMGRRIK EEGLIRWQRR DAAADAPATI AAATPSNLQA MGCLVQESDP
201: FKIRRPEARH LGSALIQQDA SNKEDGSGCP LFSSFSIAAK DEPSEQCSLS LSLGLDPRCA RAMTAASSPS GESSCILMAS PERRSSSDCS GHSGCFVGPG
301: VSLELSLSIC GS

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.