Factsheet for Zm00001d005087_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09087	Sorghum	nucleus	58.33	55.92
EES15503	Sorghum	nucleus	58.33	55.46
VIT_08s0058g00250.t01	Wine grape	nucleus	16.67	50.0
Solyc09g005030.1.1	Tomato	nucleus	18.39	43.84
Zm00001d048448_P001	Maize	nucleus	14.37	43.1
TraesCS5D01G158300.1	Wheat	nucleus	39.94	42.9
TraesCS4D01G131500.1	Wheat	nucleus	41.95	42.82
TraesCS5A01G153000.1	Wheat	nucleus	39.94	42.64
Os11t0106100-00	Rice	nucleus	25.86	42.25
TraesCS4A01G180900.1	Wheat	nucleus	41.38	42.23
TraesCS4B01G136900.1	Wheat	nucleus	39.66	40.71
VIT_06s0004g07000.t01	Wine grape	nucleus	20.69	40.68
TraesCS5B01G151800.1	Wheat	nucleus	39.08	40.36
Os12t0105600-01	Rice	nucleus	28.74	31.85
GSMUA_Achr7P22410_001	Banana	nucleus	27.87	29.22
Solyc06g051060.2.1	Tomato	nucleus	20.69	28.35
Solyc10g076460.1.1	Tomato	nucleus	24.14	27.81
PGSC0003DMT400041071	Potato	nucleus	23.56	27.15
Zm00001d046981_P001	Maize	nucleus	15.8	26.07
CDY52431	Canola	nucleus	28.74	25.71
Bra000180.1-P	Field mustard	nucleus	28.45	25.45
CDY07612	Canola	nucleus	28.45	25.26
PGSC0003DMT400068508	Potato	nucleus	23.28	24.77
Zm00001d041376_P001	Maize	nucleus	10.92	24.68
KRH75999	Soybean	nucleus	23.85	24.2
PGSC0003DMT400077217	Potato	nucleus	26.15	23.88
CDY07070	Canola	nucleus	28.45	23.8
CDX74803	Canola	nucleus	26.15	23.7
KRH49433	Soybean	nucleus	24.43	23.22
CDX93206	Canola	nucleus	27.87	23.21
KRH65638	Soybean	nucleus	22.99	23.12
KRH00305	Soybean	nucleus	24.43	23.04
Zm00001d036638_P001	Maize	nucleus	17.53	22.93
CDY18860	Canola	nucleus	26.72	22.85
Bra004973.1-P	Field mustard	nucleus	26.44	22.6
AT2G40260.1	Thale cress	nucleus	26.44	22.44
Zm00001d030911_P001	Maize	cytosol	11.21	21.91
Zm00001d002649_P001	Maize	nucleus	19.83	21.04
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	27.3	20.26
Zm00001d026106_P001	Maize	nucleus	18.68	18.95
Zm00001d017563_P002	Maize	nucleus	18.39	18.5
Zm00001d016175_P001	Maize	nucleus	25.86	16.67
Zm00001d037015_P001	Maize	nucleus	26.15	16.43
Zm00001d046174_P001	Maize	nucleus	24.71	16.2
Zm00001d027492_P001	Maize	mitochondrion	18.97	15.21
Zm00001d049511_P001	Maize	nucleus	14.66	14.7
Zm00001d024532_P001	Maize	nucleus	14.66	14.33
Zm00001d017702_P001	Maize	peroxisome	15.52	14.21
Zm00001d051527_P001	Maize	cytosol, nucleus, peroxisome, plastid	15.23	14.13
Zm00001d034181_P001	Maize	plastid	14.94	13.33
Zm00001d033310_P001	Maize	nucleus	15.8	12.76
Bra017021.1-P	Field mustard	nucleus	13.22	12.64
Zm00001d032249_P002	Maize	plastid	17.24	12.45
Zm00001d013187_P001	Maize	plastid	13.79	12.37
Zm00001d020384_P001	Maize	nucleus	16.38	11.26
Zm00001d020382_P001	Maize	nucleus, plastid	2.3	7.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:A0A1D6EJ64	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM20131.1	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000842F7A6	EnsemblPlantsGene:Zm00001d005087	EnsemblPlants:Zm00001d005087_P001	EnsemblPlants:Zm00001d005087_T001	SEG:seg	:

Description

G2-like-transcription factor 35Homeodomain-like superfamily protein

Coordinates

chr2:+:157736007..157737776

Molecular Weight (calculated)

37633.2 Da

IEP (calculated)

9.530

GRAVY (calculated)

-0.714

Length

348 amino acids

Sequence
(BLAST)

001: MMPSSDGEGG ADVPRGPDGR SSPSNSSTVE LDGDGGGGRK AGASPSSSVR PYVRSKNPRL RWTPELHLCF LRAVDRLGGQ DRATPKLVLQ LMNVKGLSIG
101: HVKSHLQMYR SKKIDGSGQV IGGGGGSWRG RLHRQLQDGG QAAYSLGHLS LHHGAGQTTA ASSAILSASF HDDPSYTMLL HGGHHHLLGS KPYYYYYSST
201: TAEAAAAAGA SLTTCAALPL IRAPAPPPPT AHQRCLLPHR QNQNNLNHHH HHHHRRRLLL LRNDEDDDTQ RQRDPLVDLE LALDIGPRRP DKRVIIERSS
301: ACDQQEAEKN VGDQQVDSAT DDDVRLSLSL FPSPPCARTG NGGRHKKS

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.