Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74803 | Canola | nucleus | 90.42 | 95.83 |
| Bra004973.1-P | Field mustard | nucleus | 95.58 | 95.58 |
| CDY07612 | Canola | nucleus | 76.9 | 79.85 |
| CDY52431 | Canola | nucleus | 76.17 | 79.69 |
| CDY07070 | Canola | nucleus | 80.84 | 79.09 |
| CDX93206 | Canola | nucleus | 80.34 | 78.23 |
| CDY71094 | Canola | mitochondrion | 11.79 | 60.0 |
| Os11t0106100-00 | Rice | nucleus | 18.18 | 34.74 |
| CDX74898 | Canola | nucleus | 27.76 | 33.04 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 26.04 | 32.52 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 25.8 | 32.41 |
| CDY00733 | Canola | mitochondrion, nucleus | 11.3 | 32.39 |
| CDX91442 | Canola | nucleus | 27.76 | 32.29 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 26.04 | 31.45 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 24.82 | 30.42 |
| CDX82805 | Canola | nucleus | 17.94 | 30.17 |
| CDX81654 | Canola | nucleus | 17.94 | 30.17 |
| CDY16660 | Canola | mitochondrion | 12.78 | 30.06 |
| CDY59419 | Canola | nucleus | 17.69 | 30.0 |
| CDX94559 | Canola | mitochondrion | 12.53 | 29.48 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 24.57 | 29.33 |
| CDY69225 | Canola | mitochondrion | 11.79 | 29.09 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 24.32 | 29.03 |
| CDY45272 | Canola | nucleus | 17.2 | 28.34 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 23.59 | 28.32 |
| EES09087 | Sorghum | nucleus | 25.06 | 28.1 |
| CDY41090 | Canola | nucleus | 16.95 | 27.94 |
| CDY17617 | Canola | nucleus | 17.69 | 27.69 |
| CDY09392 | Canola | nucleus | 17.69 | 27.48 |
| CDY70922 | Canola | nucleus | 17.44 | 27.41 |
| EES15503 | Sorghum | nucleus | 24.57 | 27.32 |
| Zm00001d005087_P001 | Maize | nucleus | 22.85 | 26.72 |
| Os12t0105600-01 | Rice | nucleus | 20.39 | 26.43 |
| CDY42825 | Canola | nucleus | 20.64 | 25.69 |
| CDY17443 | Canola | nucleus | 16.46 | 25.38 |
| CDX97319 | Canola | mitochondrion | 12.78 | 25.12 |
| CDY67147 | Canola | nucleus | 20.15 | 25.08 |
| CDY04115 | Canola | nucleus | 15.72 | 23.62 |
| CDY23916 | Canola | nucleus | 13.02 | 19.92 |
| CDY69675 | Canola | cytosol, nucleus | 5.41 | 18.97 |
| CDX84102 | Canola | nucleus | 12.53 | 18.82 |
| CDY68011 | Canola | nucleus | 9.34 | 18.01 |
| CDY54255 | Canola | nucleus | 12.53 | 17.06 |
| CDX93847 | Canola | nucleus | 14.0 | 16.86 |
| CDY35557 | Canola | nucleus | 13.76 | 16.77 |
| CDY43006 | Canola | nucleus | 13.76 | 16.47 |
| CDY01293 | Canola | nucleus | 13.76 | 16.18 |
| CDY04116 | Canola | nucleus | 7.86 | 15.76 |
| CDY28659 | Canola | nucleus | 11.79 | 15.74 |
| CDX78794 | Canola | nucleus | 12.04 | 15.71 |
| CDX70701 | Canola | nucleus | 14.0 | 14.81 |
| CDX78699 | Canola | nucleus | 14.0 | 14.77 |
| CDX69443 | Canola | nucleus | 14.25 | 14.76 |
| CDY67252 | Canola | nucleus | 14.0 | 14.47 |
| CDY38105 | Canola | nucleus | 13.76 | 14.07 |
| CDX85500 | Canola | nucleus | 13.76 | 14.04 |
| CDY02401 | Canola | nucleus | 13.51 | 8.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078FWQ2 | UniProt:A0A078FWQ2 | EnsemblPlants:CDY18860 | ProteinID:CDY18860 |
| ProteinID:CDY18860.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006041001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 |
| PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE41F8 | SEG:seg |
Description
BnaC04g04900DBnaC04g04900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWQ2]
Coordinates
chrLK032090:-:2684..4504
Molecular Weight (calculated)
45750.0 Da
IEP (calculated)
8.840
GRAVY (calculated)
-1.003
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSSQSSEN SKTCPSNNFK ETTKKEDNKD DENKDEEARS VDQIPSNNSY VEESGSHHHN NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKFG
101: GPDRATPKLV LQLMNVKGLC IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYGGG SWTDHRRQVY RSPWRGLTAR
201: DSTRTRPTLF SSQSGERFRE VSNSILDDTN KTISFRINSH EAARASNGVG ESVPSIHRSF LEGMKTLNKS WGQSLSSNPN SSTASGPQDH IDTILSSNQR
301: ENPRVAEETE NVLKRKKLLL SDDCNKSVQD LDLSLSLKVH RTHNNLGDCL IEDEEKELDD HEDIKGLSLS LSSSSSSKLG RDIRQEVQND PKKRKISVLV
401: SPLDLTL
101: GPDRATPKLV LQLMNVKGLC IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYGGG SWTDHRRQVY RSPWRGLTAR
201: DSTRTRPTLF SSQSGERFRE VSNSILDDTN KTISFRINSH EAARASNGVG ESVPSIHRSF LEGMKTLNKS WGQSLSSNPN SSTASGPQDH IDTILSSNQR
301: ENPRVAEETE NVLKRKKLLL SDDCNKSVQD LDLSLSLKVH RTHNNLGDCL IEDEEKELDD HEDIKGLSLS LSSSSSSKLG RDIRQEVQND PKKRKISVLV
401: SPLDLTL
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.