CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35557	Canola	nucleus	96.47	98.2
CDY01293	Canola	nucleus	86.47	84.97
CDX93847	Canola	nucleus	82.94	83.43
Bra023254.1-P	Field mustard	nucleus	83.24	77.32
CDX84102	Canola	nucleus	56.18	70.48
CDY71094	Canola	mitochondrion	12.65	53.75
KRH74367	Soybean	nucleus	43.24	53.26
KRH39575	Soybean	nucleus	56.76	49.49
VIT_02s0012g01940.t01	Wine grape	nucleus	53.53	49.46
CDY68011	Canola	nucleus	26.47	42.65
CDX78794	Canola	nucleus	38.24	41.67
CDY69225	Canola	mitochondrion	20.0	41.21
CDY54255	Canola	nucleus	33.82	38.46
CDY23916	Canola	nucleus	27.94	35.71
CDY28659	Canola	nucleus	31.76	35.41
CDX70701	Canola	nucleus	37.65	33.25
CDX78699	Canola	nucleus	37.35	32.9
CDY67252	Canola	nucleus	37.94	32.74
CDX69443	Canola	nucleus	37.65	32.57
PGSC0003DMT400034663	Potato	nucleus	42.94	32.44
Solyc11g011770.1.1	Tomato	nucleus	43.53	32.03
CDX85500	Canola	nucleus	37.35	31.83
CDY38105	Canola	nucleus	37.06	31.66
CDY00733	Canola	mitochondrion, nucleus	12.06	28.87
CDY16660	Canola	mitochondrion	13.53	26.59
CDX94559	Canola	mitochondrion	13.53	26.59
CDX97319	Canola	mitochondrion	13.82	22.71
CDY09392	Canola	nucleus	16.47	21.37
CDY70922	Canola	nucleus	16.18	21.24
CDY45272	Canola	nucleus	14.71	20.24
CDY59419	Canola	nucleus	14.12	20.0
CDY41090	Canola	nucleus	14.41	19.84
CDX81654	Canola	nucleus	14.12	19.83
CDX82805	Canola	nucleus	14.12	19.83
CDY17617	Canola	nucleus	15.0	19.62
CDY17443	Canola	nucleus	15.0	19.32
CDY04115	Canola	nucleus	13.53	16.97
CDX74898	Canola	nucleus	16.47	16.37
CDX91442	Canola	nucleus	16.47	16.0
CDY67147	Canola	nucleus	15.29	15.9
CDY42825	Canola	nucleus	15.0	15.6
CDY02401	Canola	nucleus	28.24	15.38
CDX74803	Canola	nucleus	16.47	14.58
CDY07612	Canola	nucleus	16.18	14.03
CDY52431	Canola	nucleus	15.88	13.88
CDY18860	Canola	nucleus	16.47	13.76
CDY07070	Canola	nucleus	15.88	12.98
CDX93206	Canola	nucleus	15.88	12.92
CDY04116	Canola	nucleus	6.18	10.34
CDY69675	Canola	cytosol, nucleus	2.35	6.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078HZJ2	UniProt:A0A078HZJ2	EnsemblPlants:CDY43006	ProteinID:CDY43006
ProteinID:CDY43006.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00075802001	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EE5490	SEG:seg	:	:	:

Description

BnaC05g28850DBnaC05g28850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZJ2]

Coordinates

chrLK032542:+:45175..50367

Molecular Weight (calculated)

38652.1 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.933

Length

340 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTNSSSKT TNNHHHPLGD LSLSNNSHQD QHQQQQHQHP HLLPNCNESN ILTSFQFQTQ QKQGFLAHDL NTHLRPIRGI
101: PLYQNPHPHH HHRPPPPYFP FDPSSVSNSG LITNPNYHNH QHHHHQTLNR ARFMPRFPAK RSMRAPRMRW TTTLHARFVH AVELLGGHER ATPKSVLELM
201: DVKDLTLAHV KSHLQMYRTV KTTDKAAASS GQSDVYENGS SGDNNSDDWM FDINRKSRDS DELMNPLEKS NGLWTNSCGE ARLHGKLIDN VAEIMLPSEK
301: EIDGKCSSYE RISSEERSLS SISGTSPFKP NLEFTLGRYH

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.