Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07070 | Canola | nucleus | 96.17 | 96.63 |
| CDX74803 | Canola | nucleus | 74.64 | 81.25 |
| CDY07612 | Canola | nucleus | 75.36 | 80.36 |
| CDY18860 | Canola | nucleus | 78.23 | 80.34 |
| CDY52431 | Canola | nucleus | 74.64 | 80.21 |
| CDY71094 | Canola | mitochondrion | 11.72 | 61.25 |
| Os11t0106100-00 | Rice | nucleus | 18.42 | 36.15 |
| CDX74898 | Canola | nucleus | 28.23 | 34.5 |
| CDX91442 | Canola | nucleus | 28.23 | 33.71 |
| CDY00733 | Canola | mitochondrion, nucleus | 11.24 | 33.1 |
| TraesCS5A01G153000.1 | Wheat | nucleus | 25.6 | 32.82 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 25.36 | 32.72 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 25.84 | 32.53 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 25.84 | 32.05 |
| TraesCS4A01G180900.1 | Wheat | nucleus | 24.88 | 30.5 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 24.64 | 30.21 |
| CDY69225 | Canola | mitochondrion | 11.72 | 29.7 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 23.92 | 29.5 |
| CDX94559 | Canola | mitochondrion | 12.2 | 29.48 |
| CDX81654 | Canola | nucleus | 16.75 | 28.93 |
| CDX82805 | Canola | nucleus | 16.75 | 28.93 |
| CDY16660 | Canola | mitochondrion | 11.96 | 28.9 |
| CDY59419 | Canola | nucleus | 16.51 | 28.75 |
| Os12t0105600-01 | Rice | nucleus | 21.05 | 28.03 |
| CDY45272 | Canola | nucleus | 16.51 | 27.94 |
| Zm00001d005087_P001 | Maize | nucleus | 23.21 | 27.87 |
| EES09087 | Sorghum | nucleus | 24.16 | 27.82 |
| CDY41090 | Canola | nucleus | 16.27 | 27.53 |
| EES15503 | Sorghum | nucleus | 23.68 | 27.05 |
| CDY17617 | Canola | nucleus | 16.75 | 26.92 |
| CDY42825 | Canola | nucleus | 21.05 | 26.91 |
| CDY09392 | Canola | nucleus | 16.51 | 26.34 |
| CDY70922 | Canola | nucleus | 16.27 | 26.25 |
| CDY67147 | Canola | nucleus | 20.1 | 25.69 |
| CDY17443 | Canola | nucleus | 16.03 | 25.38 |
| CDX97319 | Canola | mitochondrion | 12.44 | 25.12 |
| CDY04115 | Canola | nucleus | 15.31 | 23.62 |
| CDY23916 | Canola | nucleus | 12.68 | 19.92 |
| CDY68011 | Canola | nucleus | 9.57 | 18.96 |
| CDX84102 | Canola | nucleus | 12.2 | 18.82 |
| CDY54255 | Canola | nucleus | 11.96 | 16.72 |
| CDY69675 | Canola | cytosol, nucleus | 4.55 | 16.38 |
| CDY35557 | Canola | nucleus | 12.92 | 16.17 |
| CDX78794 | Canola | nucleus | 11.96 | 16.03 |
| CDY43006 | Canola | nucleus | 12.92 | 15.88 |
| CDY04116 | Canola | nucleus | 7.66 | 15.76 |
| CDX93847 | Canola | nucleus | 12.68 | 15.68 |
| CDY01293 | Canola | nucleus | 12.92 | 15.61 |
| CDY28659 | Canola | nucleus | 11.24 | 15.41 |
| CDX70701 | Canola | nucleus | 13.4 | 14.55 |
| CDX78699 | Canola | nucleus | 13.4 | 14.51 |
| CDX69443 | Canola | nucleus | 13.16 | 13.99 |
| CDY67252 | Canola | nucleus | 13.16 | 13.96 |
| CDY38105 | Canola | nucleus | 12.92 | 13.57 |
| CDX85500 | Canola | nucleus | 12.92 | 13.53 |
| CDY02401 | Canola | nucleus | 13.4 | 8.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078DV94 | EnsemblPlants:CDX93206 | ProteinID:CDX93206 | ProteinID:CDX93206.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00155153001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEAA81 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g46900D
Coordinates
chrLK031875:+:299284..301300
Molecular Weight (calculated)
47090.5 Da
IEP (calculated)
6.966
GRAVY (calculated)
-1.032
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES RSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF
101: LQAVERLGGP DRATPKLVLQ LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG NLLLLGDQGF SFEHGAGYTY NLSQLPMLQS FDQGPSTSLG YGGGLWIDHR
201: RQVYRSPWRG LTARDNTRTR QTLFSSQLGE RFLGVSNSIL DDKNKTISFR TNSREAAHAS NGIGEAVPRS HSSFLEGMKT FNKSWGQSFP SNPNPSMPSK
301: PQDHTAVTLN FHQSDNPRVG EETENDLKRK RLLLSGDYNK SNQDLDLCLS LKVPPTHNNL GECLLEEGEK EHEDSKRLSL SLSSSSLSQH GRAIRKEDQN
401: DHKKRKISVL ASPLDLTL
101: LQAVERLGGP DRATPKLVLQ LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG NLLLLGDQGF SFEHGAGYTY NLSQLPMLQS FDQGPSTSLG YGGGLWIDHR
201: RQVYRSPWRG LTARDNTRTR QTLFSSQLGE RFLGVSNSIL DDKNKTISFR TNSREAAHAS NGIGEAVPRS HSSFLEGMKT FNKSWGQSFP SNPNPSMPSK
301: PQDHTAVTLN FHQSDNPRVG EETENDLKRK RLLLSGDYNK SNQDLDLCLS LKVPPTHNNL GECLLEEGEK EHEDSKRLSL SLSSSSLSQH GRAIRKEDQN
401: DHKKRKISVL ASPLDLTL
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.