Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35557 Canola nucleus 69.74 56.59
CDY43006 Canola nucleus 70.48 56.18
CDX93847 Canola nucleus 69.37 55.62
CDY01293 Canola nucleus 69.37 54.34
CDY71094 Canola mitochondrion 15.13 51.25
GSMUA_Achr1P23970_001 Banana nucleus 38.38 50.73
GSMUA_Achr3P00380_001 Banana nucleus 43.17 44.66
GSMUA_Achr11P... Banana nucleus 38.38 43.88
GSMUA_Achr9P23320_001 Banana nucleus 36.16 43.36
VIT_16s0039g01900.t01 Wine grape nucleus 50.55 42.41
GSMUA_Achr2P18070_001 Banana nucleus 41.33 41.64
CDY69225 Canola mitochondrion 25.09 41.21
CDY68011 Canola nucleus 30.63 39.34
CDY23916 Canola nucleus 35.06 35.71
GSMUA_AchrUn_... Banana nucleus 43.54 34.5
HORVU6Hr1G000410.1 Barley nucleus 41.7 34.35
TraesCS6A01G007300.1 Wheat nucleus 41.7 34.04
TraesCS6B01G012800.1 Wheat nucleus 41.7 33.93
TraesCS6D01G011600.1 Wheat nucleus 41.33 33.73
CDX78794 Canola nucleus 38.01 33.01
GSMUA_AchrUn_... Banana nucleus 38.01 32.91
GSMUA_Achr1P06280_001 Banana mitochondrion, nucleus 47.97 31.48
CDY54255 Canola nucleus 34.69 31.44
GSMUA_AchrUn_... Banana nucleus 45.02 30.81
GSMUA_AchrUn_... Banana nucleus 36.53 30.46
CDY28659 Canola nucleus 33.58 29.84
CDY00733 Canola mitochondrion, nucleus 14.76 28.17
GSMUA_Achr8P30770_001 Banana nucleus 36.53 27.89
CDX70701 Canola nucleus 38.01 26.75
CDX78699 Canola nucleus 38.01 26.68
TraesCS6D01G248300.1 Wheat cytosol, nucleus, peroxisome, plastid 34.32 26.05
TraesCS6B01G293700.1 Wheat nucleus 33.95 25.92
TraesCS6A01G266400.1 Wheat cytosol, nucleus, peroxisome, plastid 33.58 25.63
CDY38105 Canola nucleus 37.64 25.63
CDX85500 Canola nucleus 37.64 25.56
Zm00001d017702_P001 Maize peroxisome 35.42 25.26
Os02t0696900-00 Rice plasma membrane 34.32 25.2
CDX69443 Canola nucleus 36.53 25.19
CDY67252 Canola nucleus 36.53 25.13
KXG30956 Sorghum cytosol, nucleus, peroxisome, plastid 33.95 24.86
Zm00001d051527_P001 Maize cytosol, nucleus, peroxisome, plastid 33.58 24.27
CDX94559 Canola mitochondrion 14.39 22.54
CDY16660 Canola mitochondrion 14.02 21.97
CDX97319 Canola mitochondrion 15.13 19.81
CDY45272 Canola nucleus 17.34 19.03
CDY59419 Canola nucleus 16.61 18.75
CDY09392 Canola nucleus 18.08 18.7
CDY41090 Canola nucleus 16.97 18.62
CDX82805 Canola nucleus 16.61 18.59
CDX81654 Canola nucleus 16.61 18.59
CDY70922 Canola nucleus 17.71 18.53
CDY17443 Canola nucleus 17.34 17.8
CDY17617 Canola nucleus 16.61 17.31
CDX74898 Canola nucleus 19.93 15.79
CDY04115 Canola nucleus 15.5 15.5
CDX91442 Canola nucleus 19.93 15.43
CDY02401 Canola nucleus 34.69 15.06
CDY42825 Canola nucleus 17.71 14.68
CDY67147 Canola nucleus 17.71 14.68
CDX74803 Canola nucleus 18.82 13.28
CDY07612 Canola nucleus 18.82 13.01
CDY52431 Canola nucleus 18.45 12.85
CDY18860 Canola nucleus 18.82 12.53
CDX93206 Canola nucleus 18.82 12.2
CDY07070 Canola nucleus 18.45 12.02
CDY04116 Canola nucleus 6.64 8.87
CDY69675 Canola cytosol, nucleus 0.74 1.72
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.3GO:A0A078D4S8EnsemblPlants:CDX84102ProteinID:CDX84102ProteinID:CDX84102.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00140072001InterPro:Homeobox-like_sf
InterPro:Myb_dom_plantsPFAM:PF00249PANTHER:PTHR31496PANTHER:PTHR31496:SF10InterPro:SANT/MybSUPFAM:SSF46689
TIGRFAMs:TIGR01557UniParc:UPI0004EEC3DESEG:seg:::
Description
BnaC08g07790D
Coordinates
chrLK031835:+:1309823..1312504
Molecular Weight (calculated)
30658.7 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.850
Length
271 amino acids
Sequence
(BLAST)
001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS SSKKTNNHHY PLEDLSLSNN SHPHNHHQQH HHPHLLPICN
101: GSNILTSFQN PSIPKHSSTS SSPAAAVFPF RYVVPPRFMP RFPAKRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ
201: MYRTVKSTDK AAVFSGQSDV YENGSSGENN SDDWMFDMNR KSRDSDELTN PLEKSNALWI NPSGHTPNGS S
Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)
001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH
Arabidopsis Description
KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.