CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDX84286
CDX89554
CDX90458
CDX94520
CDY01615
CDY05402
CDY05452
CDY07541
CDY09318
CDY09609
CDY21311
CDY31635
CDY38933
CDY43661
CDY51918
CDY69515
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	CDX89554	AT2G23290.1	21798944
AT2G38300.1	CDY38933	AT2G23290.1	21798944
AT2G38300.1	CDX84286	AT2G34710.1	21798944
AT2G38300.1	CDY31635	AT2G34710.1	21798944
AT2G38300.1	CDY43661	AT2G34710.1	21798944
AT2G38300.1	CDX90458	AT4G17680.1	21798944
AT2G38300.1	CDY09609	AT4G17680.1	21798944
AT2G38300.1	CDX94520	AT4G19700.1	21798944
AT2G38300.1	CDY01615	AT4G19700.1	21798944
AT2G38300.1	CDY07541	AT4G19700.1	21798944
AT2G38300.1	CDY09318	AT4G19700.1	21798944
AT2G38300.1	CDY21311	AT4G19700.1	21798944
AT2G38300.1	CDY51918	AT4G19700.1	21798944
AT2G38300.1	CDY71607	AT4G19700.1	21798944
AT2G38300.1	CDX80461	AT5G24660.1	21798944
AT2G38300.1	CDY05402	AT5G24660.1	21798944
AT2G38300.1	CDY05452	AT5G24660.1	21798944
AT2G38300.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74898	Canola	nucleus	95.14	97.37
Bra005124.1-P	Field mustard	nucleus	93.43	97.03
AT2G38300.1	Thale cress	nucleus	79.14	81.47
CDY71094	Canola	mitochondrion	14.29	62.5
VIT_08s0058g00250.t01	Wine grape	nucleus	19.14	57.76
Solyc09g005030.1.1	Tomato	nucleus	21.71	52.05
Solyc10g076460.1.1	Tomato	nucleus	31.14	36.09
PGSC0003DMT400041071	Potato	nucleus	31.14	36.09
CDY00733	Canola	mitochondrion, nucleus	14.0	34.51
PGSC0003DMT400068508	Potato	nucleus	31.43	33.64
KRH65638	Soybean	nucleus	32.57	32.95
KRH75999	Soybean	nucleus	31.71	32.36
KRH49433	Soybean	nucleus	32.57	31.15
KRH00305	Soybean	nucleus	32.0	30.35
CDY59419	Canola	nucleus	20.29	29.58
CDY16660	Canola	mitochondrion	14.57	29.48
CDX94559	Canola	mitochondrion	14.57	29.48
CDX82805	Canola	nucleus	20.29	29.34
CDX81654	Canola	nucleus	20.29	29.34
CDY07612	Canola	nucleus	32.86	29.34
CDY52431	Canola	nucleus	32.57	29.31
CDY69225	Canola	mitochondrion	13.71	29.09
CDY45272	Canola	nucleus	20.29	28.74
CDX74803	Canola	nucleus	31.14	28.39
CDY07070	Canola	nucleus	33.71	28.37
CDY41090	Canola	nucleus	20.0	28.34
CDY09392	Canola	nucleus	21.14	28.24
CDX93206	Canola	nucleus	33.71	28.23
CDY70922	Canola	nucleus	20.86	28.19
CDY42825	Canola	nucleus	26.29	28.13
CDY67147	Canola	nucleus	26.0	27.83
CDY18860	Canola	nucleus	32.29	27.76
CDY17617	Canola	nucleus	20.29	27.31
CDX97319	Canola	mitochondrion	16.0	27.05
CDY17443	Canola	nucleus	20.29	26.89
CDY04115	Canola	nucleus	19.43	25.09
CDX84102	Canola	nucleus	15.43	19.93
CDY54255	Canola	nucleus	16.86	19.73
CDY23916	Canola	nucleus	14.86	19.55
CDY68011	Canola	nucleus	10.57	17.54
CDY35557	Canola	nucleus	16.29	17.07
CDX78794	Canola	nucleus	15.14	16.99
CDX93847	Canola	nucleus	16.29	16.86
CDY04116	Canola	nucleus	9.71	16.75
CDY43006	Canola	nucleus	16.0	16.47
CDY01293	Canola	nucleus	16.0	16.18
CDY69675	Canola	cytosol, nucleus	5.14	15.52
CDY28659	Canola	nucleus	12.86	14.75
CDX69443	Canola	nucleus	15.14	13.49
CDY67252	Canola	nucleus	15.14	13.45
CDX70701	Canola	nucleus	14.57	13.25
CDX78699	Canola	nucleus	14.57	13.21
CDY38105	Canola	nucleus	14.57	12.81
CDX85500	Canola	nucleus	14.57	12.78
CDY02401	Canola	nucleus	16.29	9.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078DRB0	EnsemblPlants:CDX91442	ProteinID:CDX91442	ProteinID:CDX91442.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00152764001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EB07CA
SEG:seg	:	:	:	:	:

Description

BnaC04g07080D

Coordinates

chrLK031867:-:964329..965841

Molecular Weight (calculated)

39952.2 Da

IEP (calculated)

6.458

GRAVY (calculated)

-1.014

Length

350 amino acids

Sequence
(BLAST)

001: MIPSMDGSGK TTDREEEEEE EEEEEEEEED GEGEGEGEGE ESKVSSNTTV EAEVGKKTKV RPYVRSKVPR LRWTPDLHLR FVRAVERLGG QERATPKLVR
101: QMMNIKGLSI AHVKSHLQMY RSKKMDDQGQ AIGDNRHFIE SSTDRNIYKL SQLPMFRGYN TNHSHDSPFR YGSRFSNASL WNSSSHETNR SLIDRTCLIR
201: GSSVSNNIHG SEYWTNNRSF PNTYSSSVSN HLPKLRHNHQ ERTNLATFNS IQGHSRTFEK FETGIEERTN HVYCNKTTGK RNASTSLDLD LSLKVRVPEE
301: TTLEETETAT TTDQTLSLSL CSWKKSRVIK TDEEDRTVKI GQASTLDLTL

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.