Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82805 | Canola | nucleus | 99.59 | 99.59 |
| Bra026818.1-P | Field mustard | nucleus | 97.11 | 97.92 |
| CDY59419 | Canola | nucleus | 96.69 | 97.5 |
| CDY45272 | Canola | nucleus | 79.75 | 78.14 |
| CDY41090 | Canola | nucleus | 79.75 | 78.14 |
| AT1G14600.1 | Thale cress | nucleus | 80.58 | 76.47 |
| CDY09392 | Canola | nucleus | 63.22 | 58.4 |
| CDY70922 | Canola | nucleus | 62.4 | 58.3 |
| CDY17617 | Canola | nucleus | 62.4 | 58.08 |
| CDY71094 | Canola | mitochondrion | 19.01 | 57.5 |
| CDY69675 | Canola | cytosol, nucleus | 24.79 | 51.72 |
| CDY17443 | Canola | nucleus | 56.2 | 51.52 |
| CDY04115 | Canola | nucleus | 55.37 | 49.45 |
| CDY04116 | Canola | nucleus | 39.26 | 46.8 |
| KRG89170 | Soybean | nucleus | 40.91 | 33.67 |
| KRH49492 | Soybean | nucleus | 41.74 | 33.67 |
| CDY00733 | Canola | mitochondrion, nucleus | 19.42 | 33.1 |
| CDX94559 | Canola | mitochondrion | 20.66 | 28.9 |
| CDY16660 | Canola | mitochondrion | 19.83 | 27.75 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 32.64 | 26.07 |
| KRH36060 | Soybean | nucleus | 26.03 | 25.82 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 26.45 | 25.81 |
| KRG90693 | Soybean | nucleus | 32.23 | 25.74 |
| GSMUA_Achr11P... | Banana | nucleus | 24.79 | 25.64 |
| CDX97319 | Canola | mitochondrion | 21.9 | 25.6 |
| CDY69225 | Canola | mitochondrion | 16.53 | 24.24 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 28.93 | 23.97 |
| PGSC0003DMT400075668 | Potato | nucleus | 30.17 | 23.7 |
| Solyc04g008480.1.1 | Tomato | nucleus | 28.51 | 23.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.1 | 23.05 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 25.21 | 21.33 |
| CDX74898 | Canola | nucleus | 29.75 | 21.05 |
| CDX91442 | Canola | nucleus | 29.34 | 20.29 |
| CDY52431 | Canola | nucleus | 30.17 | 18.77 |
| CDY67147 | Canola | nucleus | 24.79 | 18.35 |
| CDX74803 | Canola | nucleus | 28.93 | 18.23 |
| CDY07612 | Canola | nucleus | 29.34 | 18.11 |
| CDY42825 | Canola | nucleus | 24.38 | 18.04 |
| CDY18860 | Canola | nucleus | 30.17 | 17.94 |
| CDY07070 | Canola | nucleus | 29.75 | 17.31 |
| CDY68011 | Canola | nucleus | 14.88 | 17.06 |
| CDX93206 | Canola | nucleus | 28.93 | 16.75 |
| CDX84102 | Canola | nucleus | 18.59 | 16.61 |
| CDY23916 | Canola | nucleus | 17.36 | 15.79 |
| CDX78794 | Canola | nucleus | 19.83 | 15.38 |
| CDY54255 | Canola | nucleus | 19.01 | 15.38 |
| CDX93847 | Canola | nucleus | 20.25 | 14.5 |
| CDY28659 | Canola | nucleus | 18.18 | 14.43 |
| CDY35557 | Canola | nucleus | 19.83 | 14.37 |
| CDY43006 | Canola | nucleus | 19.83 | 14.12 |
| CDY01293 | Canola | nucleus | 19.83 | 13.87 |
| CDX70701 | Canola | nucleus | 20.25 | 12.73 |
| CDX69443 | Canola | nucleus | 20.66 | 12.72 |
| CDY67252 | Canola | nucleus | 20.66 | 12.69 |
| CDY38105 | Canola | nucleus | 20.66 | 12.56 |
| CDX78699 | Canola | nucleus | 19.83 | 12.44 |
| CDX85500 | Canola | nucleus | 20.25 | 12.28 |
| CDY02401 | Canola | nucleus | 17.36 | 6.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078D0A3 | EnsemblPlants:CDX81654 | ProteinID:CDX81654 | ProteinID:CDX81654.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00136569001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDF92E | SEG:seg | : |
Description
BnaC08g39470D
Coordinates
chrLK031826:-:197909..200131
Molecular Weight (calculated)
27429.9 Da
IEP (calculated)
9.155
GRAVY (calculated)
-0.762
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRCGRSSDG GISGVRPYVR SPVPRLKWTP ELHQNFVHAV DMLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGYKP TLLGRSESSS SSRRRRQGNE
101: DHFYDNLSEH ARNDCLLGFH SFNFRRGRTS ADNDDDDFLN TMSMERTKTF AGIGESNKFQ SNHFLEVQRT KNIWVNEEEE EDLTLSLSLN HPHNSQKRWR
201: SNTSSSLSET SEAVSSAFIS RDCFASSKID LNLNLSFSSS SS
101: DHFYDNLSEH ARNDCLLGFH SFNFRRGRTS ADNDDDDFLN TMSMERTKTF AGIGESNKFQ SNHFLEVQRT KNIWVNEEEE EDLTLSLSLN HPHNSQKRWR
201: SNTSSSLSET SEAVSSAFIS RDCFASSKID LNLNLSFSSS SS
001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
Arabidopsis Description
Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.