Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41090 | Canola | nucleus | 82.75 | 85.43 |
| Bra026202.1-P | Field mustard | nucleus | 66.27 | 84.5 |
| CDY45272 | Canola | nucleus | 81.57 | 84.21 |
| CDX81654 | Canola | nucleus | 76.47 | 80.58 |
| CDX82805 | Canola | nucleus | 76.08 | 80.17 |
| Bra026818.1-P | Field mustard | nucleus | 75.29 | 80.0 |
| CDY59419 | Canola | nucleus | 74.9 | 79.58 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 63.14 | 62.89 |
| AT4G04555.1 | Thale cress | mitochondrion | 17.25 | 41.51 |
| KRH49492 | Soybean | nucleus | 38.43 | 32.67 |
| KRG89170 | Soybean | nucleus | 36.86 | 31.97 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 33.33 | 28.05 |
| KRG90693 | Soybean | nucleus | 33.33 | 28.05 |
| KRH36060 | Soybean | nucleus | 25.49 | 26.64 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 29.8 | 26.03 |
| AT4G04605.1 | Thale cress | mitochondrion | 22.35 | 25.91 |
| GSMUA_Achr11P... | Banana | nucleus | 23.53 | 25.64 |
| PGSC0003DMT400075668 | Potato | nucleus | 30.59 | 25.32 |
| Solyc04g008480.1.1 | Tomato | nucleus | 28.63 | 24.58 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 23.53 | 24.19 |
| AT4G04580.1 | Thale cress | nucleus | 15.69 | 24.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.45 | 23.73 |
| AT2G42660.1 | Thale cress | nucleus | 23.14 | 23.14 |
| AT2G38300.1 | Thale cress | nucleus | 28.63 | 21.47 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 23.14 | 20.63 |
| AT2G40260.1 | Thale cress | nucleus | 27.06 | 16.83 |
| AT4G17695.1 | Thale cress | nucleus | 20.0 | 15.84 |
| AT5G42630.1 | Thale cress | nucleus | 16.86 | 15.58 |
| AT1G32240.1 | Thale cress | nucleus | 20.0 | 13.14 |
| AT5G16560.1 | Thale cress | nucleus | 19.22 | 12.16 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:838022 | UniProt:A0A178WCG0 | ProteinID:AAF63176.1 | ProteinID:AEE29189.1 |
| EMBL:AJ630486 | ArrayExpress:AT1G14600 | EnsemblPlantsGene:AT1G14600 | RefSeq:AT1G14600 | TAIR:AT1G14600 | RefSeq:AT1G14600-TAIR-G |
| EnsemblPlants:AT1G14600.1 | TAIR:AT1G14600.1 | EMBL:AY568658 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_172912.3 |
| ProteinID:OAP15165.1 | PFAM:PF00249 | PO:PO:0000293 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 |
| UniProt:Q700D9 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00005DC1B5 | SEG:seg |
Description
Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
Coordinates
chr1:-:5000986..5003637
Molecular Weight (calculated)
29095.9 Da
IEP (calculated)
7.504
GRAVY (calculated)
-0.790
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.