Factsheet for GSMUA_AchrUn_randomP06480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25920_001	Banana	nucleus	57.97	68.95
GSMUA_Achr9P30700_001	Banana	mitochondrion	17.63	47.71
GSMUA_Achr5P00310_001	Banana	nucleus	13.9	45.56
GSMUA_Achr11P...	Banana	nucleus	32.54	41.03
GSMUA_Achr5P19200_001	Banana	nucleus	34.24	35.31
VIT_01s0137g00050.t01	Wine grape	nucleus	35.93	34.98
Bra026202.1-P	Field mustard	nucleus	22.37	33.0
KRG90693	Soybean	nucleus	31.86	31.02
PGSC0003DMT400075668	Potato	nucleus	31.86	30.52
Solyc04g008480.1.1	Tomato	nucleus	30.17	29.97
CDY41090	Canola	nucleus	23.73	28.34
CDY45272	Canola	nucleus	23.73	28.34
CDX81654	Canola	nucleus	23.05	28.1
CDX82805	Canola	nucleus	23.05	28.1
Bra026818.1-P	Field mustard	nucleus	22.71	27.92
CDY59419	Canola	nucleus	22.71	27.92
GSMUA_Achr2P11010_001	Banana	nucleus	27.46	27.74
AT2G02060.1	Thale cress	nucleus, plastid	24.07	27.73
AT1G14600.1	Thale cress	nucleus	23.73	27.45
KRG89170	Soybean	nucleus	27.12	27.21
KRH49492	Soybean	nucleus	27.46	27.0
CDY70922	Canola	nucleus	22.71	25.87
Bra026618.1-P	Field mustard	nucleus	22.71	25.57
CDY09392	Canola	nucleus	22.71	25.57
Bra024836.1-P	Field mustard	nucleus	22.37	25.48
CDY17617	Canola	nucleus	22.37	25.38
GSMUA_Achr7P03510_001	Banana	nucleus	16.95	24.27
GSMUA_Achr2P06700_001	Banana	cytosol, nucleus, plastid	13.9	24.26
GSMUA_Achr7P22410_001	Banana	nucleus	26.44	23.49
CDY17443	Canola	nucleus	20.68	23.11
CDY04115	Canola	nucleus	20.34	22.14
GSMUA_Achr1P23970_001	Banana	nucleus	14.92	21.46
GSMUA_Achr7P00680_001	Banana	cytosol, golgi, nucleus	15.93	20.98
GSMUA_Achr10P...	Banana	nucleus	14.58	20.57
GSMUA_Achr7P13880_001	Banana	nucleus	28.47	20.49
GSMUA_Achr9P23320_001	Banana	nucleus	15.25	19.91
GSMUA_Achr11P...	Banana	nucleus	15.93	19.83
GSMUA_Achr1P22100_001	Banana	nucleus	14.58	19.63
GSMUA_Achr7P09370_001	Banana	nucleus	24.41	19.05
GSMUA_Achr4P32400_001	Banana	plastid	15.59	18.33
GSMUA_Achr2P18070_001	Banana	nucleus	16.61	18.22
GSMUA_Achr10P...	Banana	nucleus	31.19	17.76
GSMUA_Achr4P23160_001	Banana	nucleus, plastid	16.27	17.65
GSMUA_Achr10P...	Banana	nucleus	16.27	17.27
GSMUA_Achr2P13320_001	Banana	nucleus, plastid	15.93	17.03
GSMUA_Achr3P00380_001	Banana	nucleus	14.58	16.41
KRH36060	Soybean	nucleus	13.56	16.39
GSMUA_AchrUn_...	Banana	nucleus	17.63	16.0
Bra017425.1-P	Field mustard	nucleus	10.17	15.15
GSMUA_AchrUn_...	Banana	nucleus	15.59	14.7
GSMUA_AchrUn_...	Banana	nucleus	16.61	14.33
GSMUA_Achr8P30770_001	Banana	nucleus	16.95	14.08
GSMUA_Achr7P02420_001	Banana	nucleus	16.61	13.84
CDY04116	Canola	nucleus	9.49	13.79
GSMUA_Achr4P04510_001	Banana	nucleus	16.61	13.07
GSMUA_Achr8P22900_001	Banana	nucleus	16.27	12.73
GSMUA_AchrUn_...	Banana	nucleus	15.93	11.87
GSMUA_Achr1P06280_001	Banana	mitochondrion, nucleus	16.27	11.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG06480_001
EnsemblPlants:GSMUA_AchrUn_randomP06480_001	EnsemblPlants:GSMUA_AchrUn_randomT06480_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0U6V9	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF6	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294A73D	SEG:seg	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06480_001]

Coordinates

chrchrUn_random:+:26359502..26361813

Molecular Weight (calculated)

33090.9 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.704

Length

295 amino acids

Sequence
(BLAST)

001: MGNCGRNGAV RQYVRSKVPR LRWTPELHLC FVHAIEKLGG QDKATPKLVL QLMDVRGLTI SHVKSHLQMY RSMRNDLGKQ ELHERKHSCQ SNDEGPDEQD
101: DVGSCHAWKS TKEFQSQFLY SPLPSLKRSR LDAQPSSKKS VQCSQQICEA VTSQYWIDNY MQALAVDRGI KEEGFSWQRK EGQQTEDLAA DHSSKLRVPG
201: CMVEESDPLK LMPIEIYENG CLSHKSPPLN NEFAESEETN DCSLSLSLSL HPSQSNNSSS DGGCCALGRN FNGRHSSYSV THRVNLDLSM SICGS

Best Arabidopsis Sequence Match ( AT1G14600.1 )
(BLAST)

001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS

Arabidopsis Description

Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.