Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P13320_001 | Banana | nucleus, plastid | 67.86 | 55.07 |
| GSMUA_Achr2P06700_001 | Banana | cytosol, nucleus, plastid | 34.38 | 45.56 |
| GSMUA_Achr4P32400_001 | Banana | plastid | 47.77 | 42.63 |
| GSMUA_Achr4P23160_001 | Banana | nucleus, plastid | 47.77 | 39.34 |
| GSMUA_Achr5P00310_001 | Banana | nucleus | 15.62 | 38.89 |
| GSMUA_Achr1P23970_001 | Banana | nucleus | 33.48 | 36.59 |
| GSMUA_Achr11P... | Banana | nucleus | 37.95 | 35.87 |
| GSMUA_Achr9P23320_001 | Banana | nucleus | 35.71 | 35.4 |
| GSMUA_Achr1P22100_001 | Banana | nucleus | 33.93 | 34.7 |
| GSMUA_Achr10P... | Banana | nucleus | 32.14 | 34.45 |
| GSMUA_Achr9P30700_001 | Banana | mitochondrion | 16.52 | 33.95 |
| GSMUA_Achr3P00380_001 | Banana | nucleus | 39.29 | 33.59 |
| GSMUA_Achr2P18070_001 | Banana | nucleus | 39.73 | 33.09 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 28.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.05 | 26.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.39 | 26.46 |
| GSMUA_Achr7P02420_001 | Banana | nucleus | 41.07 | 25.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.29 | 25.73 |
| GSMUA_Achr8P30770_001 | Banana | nucleus | 39.29 | 24.79 |
| GSMUA_Achr4P04510_001 | Banana | nucleus | 41.07 | 24.53 |
| GSMUA_Achr1P06280_001 | Banana | mitochondrion, nucleus | 44.2 | 23.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.96 | 23.74 |
| GSMUA_Achr8P22900_001 | Banana | nucleus | 38.84 | 23.08 |
| GSMUA_Achr11P... | Banana | nucleus | 20.54 | 19.66 |
| GSMUA_Achr7P03510_001 | Banana | nucleus | 16.96 | 18.45 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 19.2 | 17.34 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 20.98 | 16.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.98 | 15.93 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 22.77 | 15.36 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 19.2 | 15.04 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 24.11 | 14.29 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 23.21 | 12.68 |
| GSMUA_Achr10P... | Banana | nucleus | 26.34 | 11.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr7G00680_001 |
| EnsemblPlants:GSMUA_Achr7P00680_001 | EnsemblPlants:GSMUA_Achr7T00680_001 | InterPro:Homeobox-like_sf | UniProt:M0TDK8 | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PANTHER:PTHR31496 | PANTHER:PTHR31496:SF12 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002955D78 |
| SEG:seg | : | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G00680_001]
Coordinates
chr7:+:566958..568282
Molecular Weight (calculated)
24940.7 Da
IEP (calculated)
8.962
GRAVY (calculated)
-0.515
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIFPDLSL HISPPAISFD HAEPTLSLGL EAPGSSVADR HDLHHRDHHH HHHHDQLRHP QTYGFKRNSR SAQGGKRSVR APRMRWTTTL HAHFVHAVEL
101: LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD RGAAGQGQAE MCFNQRRGME EVEGGLSCDK AGNEITPPCS SLSTPTPPTP QSKSPRSVHS
201: IHLLLTASIY LSIYLFVGFK CFHE
101: LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD RGAAGQGQAE MCFNQRRGME EVEGGLSCDK AGNEITPPCS SLSTPTPPTP QSKSPRSVHS
201: IHLLLTASIY LSIYLFVGFK CFHE
001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI
Arabidopsis Description
KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.