Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G04555.1 | Thale cress | mitochondrion | 42.17 | 66.04 |
| VIT_00s1624g00010.t01 | Wine grape | nucleus | 23.49 | 31.71 |
| CDY00733 | Canola | mitochondrion, nucleus | 24.7 | 28.87 |
| Bra029503.1-P | Field mustard | mitochondrion | 27.11 | 26.16 |
| CDY16660 | Canola | mitochondrion | 27.11 | 26.01 |
| CDX94559 | Canola | mitochondrion | 26.51 | 25.43 |
| AT4G04605.1 | Thale cress | mitochondrion | 30.12 | 22.73 |
| KRG99004 | Soybean | nucleus | 23.49 | 18.75 |
| Solyc02g080860.1.1 | Tomato | nucleus | 26.51 | 17.39 |
| AT2G42660.1 | Thale cress | nucleus | 26.51 | 17.25 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 25.9 | 16.8 |
| AT1G14600.1 | Thale cress | nucleus | 24.1 | 15.69 |
| AT5G42630.1 | Thale cress | nucleus | 25.3 | 15.22 |
| AT2G38300.1 | Thale cress | nucleus | 28.92 | 14.12 |
| Solyc02g080740.1.1 | Tomato | nucleus | 23.49 | 14.08 |
| Solyc02g080730.1.1 | Tomato | nucleus | 21.08 | 12.96 |
| AT2G40260.1 | Thale cress | nucleus | 31.33 | 12.68 |
| AT4G17695.1 | Thale cress | nucleus | 24.1 | 12.42 |
| Solyc02g080720.1.1 | Tomato | nucleus | 22.89 | 11.66 |
| AT1G32240.1 | Thale cress | nucleus | 25.3 | 10.82 |
| AT5G16560.1 | Thale cress | nucleus | 25.3 | 10.42 |
| Solyc02g080710.1.1 | Tomato | nucleus | 22.29 | 10.31 |
| PGSC0003DMT400042480 | Potato | nucleus | 10.84 | 8.78 |
| PGSC0003DMT400042402 | Potato | nucleus | 9.04 | 8.57 |
| Solyc02g080680.1.1 | Tomato | mitochondrion | 10.84 | 7.86 |
| Os12t0591600-01 | Rice | nucleus | 6.63 | 5.5 |
| KRH45989 | Soybean | nucleus | 4.82 | 4.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | EntrezGene:825790 | UniProt:A0A178USM1 | ProteinID:AAD29772.1 | ProteinID:AEE82400.1 |
| ArrayExpress:AT4G04580 | EnsemblPlantsGene:AT4G04580 | RefSeq:AT4G04580 | TAIR:AT4G04580 | RefSeq:AT4G04580-TAIR-G | EnsemblPlants:AT4G04580.1 |
| TAIR:AT4G04580.1 | ProteinID:CAB80823.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_192367.1 | ProteinID:OAO96858.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | UniProt:Q9XEB2 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00000A2908 | SEG:seg | : | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9XEB2]
Coordinates
chr4:-:2293704..2294906
Molecular Weight (calculated)
19217.0 Da
IEP (calculated)
9.343
GRAVY (calculated)
-0.810
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPMVRSYI RSDNPRMHWT DDLDIRFIQV IEKLGGEESA TPKRILSLMG VRDLTISHVK SHLQMYRNKK KEESSKEIKM MREMTQRQSQ QYLQIYERAT
101: QFIQNQQRLQ LDNTEKITPV LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY
101: QFIQNQQRLQ LDNTEKITPV LGSSNKSLDQ SSKVGLNENR GNDVVVVGGA TGEEELSLEL TLGRKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.