Factsheet for VIT_00s1624g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71094	Canola	mitochondrion	43.9	67.5
Bra018498.1-P	Field mustard	mitochondrion	37.4	64.79
VIT_12s0028g00980.t01	Wine grape	nucleus	35.77	61.11
VIT_10s0003g01380.t01	Wine grape	mitochondrion	35.77	57.89
VIT_08s0058g00250.t01	Wine grape	nucleus	40.65	43.1
AT4G04555.1	Thale cress	mitochondrion	34.96	40.57
VIT_06s0004g07000.t01	Wine grape	nucleus	44.72	31.07
CDY00733	Canola	mitochondrion, nucleus	34.96	30.28
CDX97319	Canola	mitochondrion	43.9	26.09
KRH36473	Soybean	nucleus	59.35	25.8
Solyc02g080860.1.1	Tomato	nucleus	52.03	25.3
KRH11454	Soybean	nucleus	58.54	25.09
Bra029503.1-P	Field mustard	mitochondrion	34.15	24.42
CDX94559	Canola	mitochondrion	34.15	24.28
CDY16660	Canola	mitochondrion	34.15	24.28
AT4G04605.1	Thale cress	mitochondrion	43.09	24.09
KRG99004	Soybean	nucleus	40.65	24.04
AT4G04580.1	Thale cress	nucleus	31.71	23.49
VIT_12s0028g02080.t01	Wine grape	nucleus	41.46	21.07
Solyc02g080740.1.1	Tomato	nucleus	46.34	20.58
Solyc02g080730.1.1	Tomato	nucleus	43.9	20.0
VIT_01s0137g00050.t01	Wine grape	nucleus	43.9	17.82
Solyc02g080720.1.1	Tomato	nucleus	46.34	17.48
Solyc02g080710.1.1	Tomato	nucleus	47.15	16.16
PGSC0003DMT400042480	Potato	nucleus	26.02	15.61
VIT_16s0039g01900.t01	Wine grape	nucleus	38.21	14.55
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	49.59	13.01
PGSC0003DMT400042402	Potato	nucleus	17.89	12.57
VIT_18s0001g11390.t01	Wine grape	nucleus	33.33	12.46
VIT_02s0012g01940.t01	Wine grape	nucleus	35.77	11.96
Solyc02g080680.1.1	Tomato	mitochondrion	19.51	10.48
VIT_04s0043g00340.t01	Wine grape	nucleus	33.33	8.78
KRH45989	Soybean	nucleus	4.07	3.11
Os12t0591600-01	Rice	nucleus	1.63	1.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ProteinID:CCB48486	ProteinID:CCB48486.1	UniProt:F6H8E3	EMBL:FN595363
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002107ED1	ArrayExpress:VIT_00s1624g00010	EnsemblPlantsGene:VIT_00s1624g00010	EnsemblPlants:VIT_00s1624g00010.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:39887124..39887754

Molecular Weight (calculated)

14377.6 Da

IEP (calculated)

11.492

GRAVY (calculated)

-0.709

Length

123 amino acids

Sequence
(BLAST)

001: MKRVERENFS RKSPSSSLGN QGDSFESSNM RTLRRPRRLD SLLSDISLKS SMVRPYVRSK LPRLRWTPDL HRCFVHAVER LGGEDRATPK MILQIMDVKG
101: LSISHIKSHL QMYRSMKHEQ IVQ

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.