Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G098200.1 | Wheat | nucleus | 81.63 | 90.74 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 81.63 | 90.36 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 78.98 | 86.88 |
| Os02t0241200-00 | Rice | nucleus | 56.63 | 54.86 |
| EES04827 | Sorghum | nucleus | 46.02 | 45.76 |
| Zm00001d016175_P001 | Maize | nucleus | 45.27 | 44.26 |
| VIT_12s0028g02080.t01 | Wine grape | nucleus | 17.42 | 38.02 |
| TraesCS7B01G238000.1 | Wheat | nucleus | 35.98 | 36.26 |
| PGSC0003DMT400011207 | Potato | nucleus | 14.39 | 32.07 |
| AT2G42660.1 | Thale cress | nucleus | 14.77 | 30.59 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 17.61 | 30.29 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 19.13 | 29.97 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 21.02 | 29.37 |
| TraesCS7B01G372000.1 | Wheat | nucleus | 13.83 | 29.2 |
| TraesCS7B01G372200.1 | Wheat | nucleus | 13.45 | 28.98 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 18.18 | 28.32 |
| Solyc02g076670.2.1 | Tomato | nucleus | 17.99 | 28.11 |
| KRH22274 | Soybean | nucleus | 19.51 | 27.91 |
| KRH27060 | Soybean | nucleus | 19.32 | 27.72 |
| TraesCS7B01G372100.1 | Wheat | nucleus | 12.5 | 27.5 |
| PGSC0003DMT400026419 | Potato | nucleus | 17.99 | 27.3 |
| KRH11029 | Soybean | nucleus | 18.75 | 27.12 |
| CDY67147 | Canola | nucleus | 16.67 | 26.91 |
| CDY42825 | Canola | nucleus | 16.67 | 26.91 |
| KRH21258 | Soybean | nucleus | 18.37 | 26.01 |
| KRH42874 | Soybean | nucleus | 19.32 | 25.37 |
| KRH58975 | Soybean | nucleus | 19.13 | 25.19 |
| TraesCS6B01G270800.1 | Wheat | nucleus | 13.07 | 21.7 |
| TraesCS2B01G420900.1 | Wheat | mitochondrion, nucleus | 11.74 | 21.16 |
| TraesCS1B01G216600.1 | Wheat | nucleus | 13.83 | 20.74 |
| Bra000270.1-P | Field mustard | nucleus | 10.98 | 20.14 |
| TraesCS4B01G323600.1 | Wheat | nucleus | 13.64 | 18.8 |
| TraesCS6B01G012800.1 | Wheat | nucleus | 11.55 | 18.32 |
| TraesCS5B01G068000.1 | Wheat | nucleus | 11.55 | 17.68 |
| TraesCS7B01G200700.1 | Wheat | nucleus, plastid | 10.42 | 15.85 |
| TraesCS6B01G293700.1 | Wheat | nucleus | 10.61 | 15.77 |
| TraesCS4B01G072500.1 | Wheat | nucleus | 10.98 | 15.63 |
| TraesCS5B01G407600.1 | Wheat | plastid | 11.17 | 15.49 |
| TraesCS5B01G201900.1 | Wheat | nucleus, plastid | 11.17 | 13.08 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF20 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS6B01G138200 |
| EnsemblPlants:TraesCS6B01G138200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:135707764..135709880
Molecular Weight (calculated)
58318.9 Da
IEP (calculated)
8.308
GRAVY (calculated)
-0.705
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQGECLSDS PVIYSHVTRL FMLPLLSHTS GGVDRERERV SELPSISAIE EGKMITREEE RIMRDVEDKQ VIAEIIMDDR KRSVKERTLD LNEEIDMESE
101: EGEVGNDKDE EEEDDGGSTT DVAGSRSSSN NSSTNHASET QKGTGGGEHR VRQYNRSKLP RLRWTPDLHM AFIRAVERLG GQERATPKLV LQMMNVRGLS
201: IAHVKSHLQM YRSKKLDHEG QRIRGAISSV FSPMDFHSMR GDRRFHDMLL QRAAALSSTA ERGGFFVSRN GGGGGNTTSR LYGILQHQHR PSPMQSGFKN
301: CSFRNQEWAF DQRGMMARND VKAPSTTPHF FASSSVRRWP LTSAVAGAGE QMRDESFGYF TGHGSGPLSR PMAPATSVVP GGGNHRLPFR WHGGDGGKGA
401: KATSSDPVMI VEALDSQQQK HLEQQRALIT LADKMRLPAE TPELELSLSP ATATETTDGT PSKKRKKSTP ASREKELEHA NKLSISLSLL PPAASMPMQR
501: QEKTRGGSVE AALGQSTLDL TMSIRALE
101: EGEVGNDKDE EEEDDGGSTT DVAGSRSSSN NSSTNHASET QKGTGGGEHR VRQYNRSKLP RLRWTPDLHM AFIRAVERLG GQERATPKLV LQMMNVRGLS
201: IAHVKSHLQM YRSKKLDHEG QRIRGAISSV FSPMDFHSMR GDRRFHDMLL QRAAALSSTA ERGGFFVSRN GGGGGNTTSR LYGILQHQHR PSPMQSGFKN
301: CSFRNQEWAF DQRGMMARND VKAPSTTPHF FASSSVRRWP LTSAVAGAGE QMRDESFGYF TGHGSGPLSR PMAPATSVVP GGGNHRLPFR WHGGDGGKGA
401: KATSSDPVMI VEALDSQQQK HLEQQRALIT LADKMRLPAE TPELELSLSP ATATETTDGT PSKKRKKSTP ASREKELEHA NKLSISLSLL PPAASMPMQR
501: QEKTRGGSVE AALGQSTLDL TMSIRALE
001: MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
Arabidopsis Description
At2g45350/F14N22.7 [Source:UniProtKB/TrEMBL;Acc:Q9SJJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.