Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91463 | Sorghum | nucleus | 97.04 | 96.33 |
| Os03t0569900-01 | Rice | nucleus | 86.21 | 87.06 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 59.11 | 73.17 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 59.36 | 72.81 |
| GSMUA_Achr10P... | Banana | nucleus | 70.69 | 66.13 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 61.33 | 61.18 |
| Zm00001d009512_P001 | Maize | mitochondrion | 19.7 | 60.61 |
| Zm00001d026346_P002 | Maize | extracellular | 63.3 | 60.05 |
| Zm00001d002244_P003 | Maize | nucleus | 63.79 | 57.81 |
| Zm00001d010739_P001 | Maize | mitochondrion | 17.24 | 56.45 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 63.3 | 56.36 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 19.7 | 56.34 |
| Zm00001d007929_P002 | Maize | nucleus | 46.06 | 52.09 |
| Zm00001d021633_P006 | Maize | nucleus | 56.9 | 49.68 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 50.49 | 48.35 |
| Zm00001d020748_P002 | Maize | plasma membrane | 51.23 | 48.04 |
| Zm00001d021149_P001 | Maize | cytosol | 18.47 | 45.45 |
| Zm00001d050838_P001 | Maize | plastid | 46.06 | 43.49 |
| Zm00001d006496_P004 | Maize | nucleus | 57.64 | 43.09 |
| Zm00001d025551_P002 | Maize | plastid | 44.58 | 40.04 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.06 | 39.45 |
| Zm00001d016252_P001 | Maize | nucleus | 35.47 | 38.3 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 19.21 | 29.1 |
| Zm00001d026528_P001 | Maize | plastid | 13.55 | 25.0 |
| Zm00001d031525_P004 | Maize | nucleus | 28.08 | 24.46 |
| Zm00001d027869_P002 | Maize | nucleus | 44.83 | 23.85 |
| Zm00001d048824_P004 | Maize | nucleus | 26.11 | 23.71 |
| Zm00001d049759_P003 | Maize | nucleus | 25.12 | 22.27 |
| Zm00001d026522_P001 | Maize | nucleus | 12.81 | 21.31 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 16.01 | 18.21 |
| Zm00001d032807_P001 | Maize | nucleus | 15.76 | 17.83 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 23.65 | 14.72 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 23.4 | 14.57 |
| Zm00001d019824_P004 | Maize | cytosol | 22.41 | 13.87 |
| Zm00001d046487_P001 | Maize | cytosol | 21.67 | 13.69 |
| Zm00001d005276_P007 | Maize | cytosol | 21.92 | 13.61 |
| Zm00001d047790_P001 | Maize | plastid | 21.92 | 12.11 |
Protein Annotations
| EntrezGene:100382091 | MapMan:16.9.4 | Gene3D:3.30.70.330 | ProteinID:AQK64442.1 | EMBL:BT063107 | EMBL:BT063121 |
| UniProt:C0P488 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF9 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001948CBD | EnsemblPlantsGene:Zm00001d013812 |
| EnsemblPlants:Zm00001d013812_P001 | EnsemblPlants:Zm00001d013812_T001 | SEG:seg | : | : | : |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr5:+:21282883..21293656
Molecular Weight (calculated)
44477.6 Da
IEP (calculated)
5.422
GRAVY (calculated)
-0.797
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQPPPPHQQ QQWAMAPPPP PQYYQAGHPP PPPPQFYQAG PPPPAMWGQP PPQAAAAPAP AGGGAGDEAR TLWIGDLQYW MDENYLYSCF SQAGEVISVK
101: IIRNKQTGQP EGYGFIEFSN HAVAEQVLQN YNGQMMPNVN QPFKLNWATS GAGEKRGDDG SDYTIFVGDL ASDVTDFILQ DTFKSRYPSV KGAKVVFDRT
201: TGRSKGYGFV KFADSDEQTR AMTEMNGQYC SSRAMRLGPA SNKKNTGGPQ PSSAIYQNTQ GTDSDSDPNN TTVFVGGLDP SVTDELLKQT FSPYGELLYV
301: KIPVGKRCGF VQYSNRASAE EAIRVLNGSQ LGGQSIRLSW GRSPANKQPQ QEQSQWSGGG YYGYPQGYDP YGYARPPQDP AMYAYAAYPG YGNYQQQPPQ
401: QPPPQQ
101: IIRNKQTGQP EGYGFIEFSN HAVAEQVLQN YNGQMMPNVN QPFKLNWATS GAGEKRGDDG SDYTIFVGDL ASDVTDFILQ DTFKSRYPSV KGAKVVFDRT
201: TGRSKGYGFV KFADSDEQTR AMTEMNGQYC SSRAMRLGPA SNKKNTGGPQ PSSAIYQNTQ GTDSDSDPNN TTVFVGGLDP SVTDELLKQT FSPYGELLYV
301: KIPVGKRCGF VQYSNRASAE EAIRVLNGSQ LGGQSIRLSW GRSPANKQPQ QEQSQWSGGG YYGYPQGYDP YGYARPPQDP AMYAYAAYPG YGNYQQQPPQ
401: QPPPQQ
001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
Arabidopsis Description
RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.