Factsheet for Zm00001d027869_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95414	Sorghum	nucleus	38.14	70.12
Os03t0174100-02	Rice	nucleus	35.78	65.62
TraesCS4A01G014200.1	Wheat	nucleus	34.99	64.18
HORVU4Hr1G075700.5	Barley	nucleus	34.99	64.18
GSMUA_Achr8P31320_001	Banana	nucleus	31.32	59.75
TraesCS4D01G288600.1	Wheat	nucleus	35.39	59.08
TraesCS4B01G289600.1	Wheat	nucleus	35.39	58.82
Zm00001d009512_P001	Maize	mitochondrion	9.7	56.06
VIT_06s0004g02040.t01	Wine grape	nucleus	32.11	55.06
PGSC0003DMT400018998	Potato	nucleus	30.14	55.02
Solyc11g065880.1.1	Tomato	nucleus	29.88	54.68
KRH23136	Soybean	cytosol	29.88	54.42
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	9.83	52.82
KRH29709	Soybean	cytosol	27.39	52.12
Bra002230.1-P	Field mustard	nucleus	28.57	52.03
CDY13992	Canola	nucleus	28.57	52.03
CDX92537	Canola	nucleus	28.57	52.03
AT5G19350.1	Thale cress	cytosol	28.83	51.76
Zm00001d010739_P001	Maize	mitochondrion	8.39	51.61
KRH24702	Soybean	nucleus	26.74	50.87
CDX88893	Canola	cytosol, nucleus, peroxisome	27.65	49.07
Bra006502.1-P	Field mustard	nucleus	27.52	48.84
CDX70874	Canola	cytosol, nucleus, peroxisome	27.52	48.84
Zm00001d021149_P001	Maize	cytosol	9.83	45.45
Zm00001d013812_P001	Maize	nucleus	23.85	44.83
KRH10201	Soybean	mitochondrion, nucleus, plastid	16.78	43.54
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	23.33	41.98
Zm00001d020748_P002	Maize	plasma membrane	23.72	41.8
Zm00001d026346_P002	Maize	extracellular	23.33	41.59
Zm00001d049416_P001	Maize	extracellular, nucleus	24.51	41.01
Zm00001d050838_P001	Maize	plastid	22.41	39.77
Zm00001d002244_P003	Maize	nucleus	23.33	39.73
Zm00001d007929_P002	Maize	nucleus	17.82	37.88
Zm00001d025551_P002	Maize	plastid	22.02	37.17
Zm00001d021633_P006	Maize	nucleus	22.54	36.99
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	22.8	36.71
Zm00001d006496_P004	Maize	nucleus	24.12	33.89
Zm00001d016252_P001	Maize	nucleus	15.73	31.91
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	8.91	25.37
Zm00001d026528_P001	Maize	plastid	6.82	23.64
Zm00001d031525_P004	Maize	nucleus	12.06	19.74
Zm00001d048824_P004	Maize	nucleus	11.53	19.69
Zm00001d014094_P002	Maize	extracellular, plasma membrane	8.91	19.05
Zm00001d032807_P001	Maize	nucleus	8.65	18.38
Zm00001d049759_P003	Maize	nucleus	10.62	17.69
Zm00001d026522_P001	Maize	nucleus	4.85	15.16
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	11.4	13.34
Zm00001d019824_P004	Maize	cytosol	11.27	13.11
Zm00001d025801_P005	Maize	cytosol, plastid	11.01	12.88
Zm00001d005276_P007	Maize	cytosol	10.88	12.69
Zm00001d046487_P001	Maize	cytosol	10.22	12.13
Zm00001d047790_P001	Maize	plastid	11.4	11.84

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1D6JQ76	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONL94145.1	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000842613A	EnsemblPlantsGene:Zm00001d027869	EnsemblPlants:Zm00001d027869_P002	EnsemblPlants:Zm00001d027869_T002	SEG:seg

Description

Polyadenylate-binding protein RBP47B'

Coordinates

chr1:+:15961983..15975352

Molecular Weight (calculated)

83738.8 Da

IEP (calculated)

7.973

GRAVY (calculated)

-0.597

Length

763 amino acids

Sequence
(BLAST)

001: MAAPYHQPTS LEEVRTLWIG DLQYWTDENY LYSCFAHTGE VQSVKIIRNK VTSLPEGYGF IEFVSHEAAE KILQTYNGTQ MPGTEHTFRL NWASFSSGER
101: RPDPGSDHSI FVGDLAPDVT DYLLQETFRV NYSSVRGAKV VTDPNTGRSK GYGFVKFADE NEKNRAMTEM NGVYCSTRPM RISAAIPKKS TGSQLQYSAA
201: KAVYPATAYA MPQLQAVLPD SDPTNTTIFI GNLDPNVIED ELRQICVQAS AEEAVQRLHG TMIGQQAVRL SWGRSPASKQ VEGTVDATSV AGSHPGMEQK
301: EEPYDPMNIP DVDKSKVTSQ VTDACRRDGC VVERSIDTES YALTILCHVS CSKPAALSVP VSTSGLWPCR KDQCGLLLQV VSRYVRDETY EDIEAPHWAD
401: LTDPNAGRAA VDDEAWFCRP DCQHPKTADD FLKLSPSPKG KLLRSVSAML PFVERDANAS SLRDGSGNLN WQGGGAVTAS TPPKLKAAPK KRFQEDSENQ
501: DPSLATPPPR QGPSRPPFGA PRWNKHAKET IKSSAEKRPD NAEKEALLNK HAPPRQLKST LSARNLFSGK DILGQISEFY DELKRMVGGS RPVTDTQEVY
601: SLNPMNPSDL MEKVVPDAPD SFISNPVPAE IVKEVATQER VKKSPSPMKG KKVGLKVEAG KPRSPSVLKE VKATPPTPQR FPSPSPNRIK NVKLGGAAIA
701: GSPLKNPLKE KGTPSNSKDP ESKKYAVRQP FGVKDMNNTR ACDAEGSSSS MFWFLKPCTF LVE

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.