Factsheet for PGSC0003DMT400058919

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400016249
PGSC0003DMT400056874

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	PGSC0003DMT400056874	AT1G16500.1	21798944
AT3G14100.1	PGSC0003DMT400016249	AT2G22090.2	12024044
AT3G14100.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g122180.2.1	Tomato	nucleus	98.56	98.56
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	86.09	86.09
GSMUA_Achr6P11660_001	Banana	mitochondrion	77.94	76.83
AT3G14100.1	Thale cress	nucleus	78.42	76.58
GSMUA_Achr10P...	Banana	mitochondrion	76.98	75.53
CDY61476	Canola	nucleus	74.58	74.22
Bra030908.1-P	Field mustard	nucleus	74.58	74.22
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	77.22	74.19
Bra037962.1-P	Field mustard	nucleus	74.82	74.11
CDY02486	Canola	nucleus	74.58	74.05
CDY51403	Canola	nucleus	74.34	73.81
CDY33092	Canola	nucleus	75.06	73.65
PGSC0003DMT400066072	Potato	nucleus	70.26	71.46
AT1G54080.2	Thale cress	nucleus	73.62	71.4
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	68.11	70.82
GSMUA_Achr11P...	Banana	nucleus	75.06	70.5
Os11t0620100-01	Rice	nucleus	71.7	67.8
TraesCS4B01G148600.1	Wheat	nucleus	72.18	67.64
Os07t0615400-01	Rice	nucleus	68.82	67.21
Zm00001d048824_P004	Maize	nucleus	71.7	66.89
TraesCS4D01G150600.2	Wheat	nucleus	71.22	66.15
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	23.02	65.75
EES08860	Sorghum	nucleus	69.06	65.31
TraesCS4A01G150000.1	Wheat	mitochondrion	70.02	65.18
TraesCS2D01G176700.1	Wheat	nucleus	65.95	64.55
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	76.74	64.52
TraesCS2A01G169100.1	Wheat	nucleus	65.71	64.02
TraesCS2B01G195400.1	Wheat	nucleus	65.71	63.87
HORVU4Hr1G033990.7	Barley	golgi, nucleus	67.15	63.78
Zm00001d026528_P001	Maize	plastid	33.33	63.18
Zm00001d026522_P001	Maize	nucleus	32.85	56.15
HORVU2Hr1G031260.2	Barley	nucleus, plastid	66.19	55.53
PGSC0003DMT400013036	Potato	nucleus	25.66	26.75
PGSC0003DMT400020621	Potato	nucleus	25.18	26.52
PGSC0003DMT400057203	Potato	cytosol	25.18	26.05
PGSC0003DMT400066648	Potato	nucleus	26.14	25.95
PGSC0003DMT400029379	Potato	nucleus	24.7	25.75
PGSC0003DMT400042504	Potato	nucleus	25.42	25.67
PGSC0003DMT400018998	Potato	nucleus	23.5	23.45
PGSC0003DMT400023075	Potato	nucleus	17.03	19.56
PGSC0003DMT400012508	Potato	nucleus	5.76	19.35
PGSC0003DMT400014744	Potato	nucleus	16.79	19.23
PGSC0003DMT400066245	Potato	extracellular	23.26	15.09
PGSC0003DMT400039842	Potato	cytosol	19.66	13.67
PGSC0003DMT400021673	Potato	cytosol	20.38	13.54
PGSC0003DMT400033802	Potato	cytosol	19.66	13.49
PGSC0003DMT400064531	Potato	cytosol	15.35	12.03

Protein Annotations

EntrezGene:102601450	MapMan:16.9.3	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1C3I3	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400022889	PGSC:PGSC0003DMG400022889	EnsemblPlants:PGSC0003DMT400058919	PFscan:PS50102	PANTHER:PTHR44160
PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294B0D9
RefSeq:XP_006342935.1	SEG:seg	:	:	:	:

Description

Oligouridylate binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022889]

Coordinates

chr3:-:61327284..61332067

Molecular Weight (calculated)

45674.8 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.421

Length

417 amino acids

Sequence
(BLAST)

001: MLNQRLKQEQ QQALMQQALL QQQSLYHPGL IAAPQIPSGN LPPGFDPSTC RSVYIGNIHP QVSETLLHEL FSCTGLVEGC KLVRKDKSSY GFVHYYDRRS
101: AELAIVTQNG RHLFGQPIKV NWAYASGQRE DTSSHFNVFV GDLSPEVTDA MLFACFSVYP SCSDARVMWD QQTGRSRGFG FVSFRNQQDA QSAINDLTGK
201: WLGSRQIRCN WATKGANSND EQGSEIRSVV ELTNGSSEDG KDPANSDAPE NNTQYTTVYV GNLAPEATQL DLHRHFYAIG AGVIEEVRVQ RDKGFGFVRY
301: STHDEAALAI QMGNAQSILC GRQIKCSWGN KPTPPGTASN PLPPPAAAPL GLTATDILTY ERQLAMSKMA GVHALMQPQG QHPLKQASMG MSASGASQAI
401: YDGGFQNLAA QQLMYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.