Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01210 | Canola | cytosol | 100.0 | 100.0 |
| CDY01209 | Canola | cytosol | 87.68 | 85.82 |
| CDY12749 | Canola | cytosol | 87.68 | 85.82 |
| AT4G14270.1 | Thale cress | cytosol | 47.1 | 45.45 |
| Bra000227.1-P | Field mustard | nucleus | 26.81 | 29.84 |
| Bra016934.1-P | Field mustard | mitochondrion | 32.61 | 28.66 |
Protein Annotations
Description
AT4G14270 (E=2e-050) | Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.
Coordinates
chrA04:-:4667407..4667884
Molecular Weight (calculated)
16044.6 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.751
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVVDRSVS TLNPNAPAFD PVGFREVEDF SPKWWELVTT SKWFRDFWLS ANSEEYEFGD MEDEFEELIL TSSGENEMGG SSVRESDVGR YLKALLSMAE
101: STKGKLYRSN VSCSAKYNQK RMNPNFYCRR NHHIYQPR
101: STKGKLYRSN VSCSAKYNQK RMNPNFYCRR NHHIYQPR
001: MTATIDRRLS TLNPNAPVFD PVEFREVEDF SPKWWDLVTT SKWFRDFWLS ANSENEFLGG DDFSVMEEEF EEMIASSDGG SMADTVTEAD VASYLKMLLN
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
101: IAESTKEKIY RSKVSSCSPK YNQKKYMNPN FNCRRNHHIY QPR
Arabidopsis Description
CID2Polyadenylate-binding protein-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94AR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.