Factsheet for Os08t0542900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0504800-01
Os08t0314800-02
Os09t0115400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	Os04t0504800-01	AT1G49760.1	21798944
AT2G43970.1	Os08t0314800-02	AT1G49760.1	21798944
AT2G43970.1	Os09t0115400-01	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G265700.1	Wheat	nucleus	56.21	61.07
TraesCS7D01G269000.1	Wheat	nucleus	55.97	60.81
TraesCS7B01G166700.1	Wheat	nucleus	55.97	60.81
HORVU7Hr1G056460.1	Barley	nucleus	53.63	58.72
Zm00001d031707_P001	Maize	nucleus	58.31	57.91
EES15258	Sorghum	nucleus	57.85	56.52
VIT_05s0094g01400.t01	Wine grape	mitochondrion	35.83	47.08
VIT_09s0002g07980.t01	Wine grape	cytosol	7.49	47.06
Os11t0248200-01	Rice	nucleus, plasma membrane	38.17	46.05
GSMUA_Achr3P19230_001	Banana	nucleus	43.79	41.1
GSMUA_Achr6P18240_001	Banana	nucleus	43.33	40.3
CDY17896	Canola	nucleus	40.98	38.63
Os12t0225100-01	Rice	nucleus	21.78	38.27
Bra004795.1-P	Field mustard	nucleus	42.15	36.36
KRG97304	Soybean	nucleus	39.58	36.11
GSMUA_Achr2P11420_001	Banana	mitochondrion	41.69	36.11
Solyc08g015650.2.1	Tomato	nucleus	38.41	35.96
KRH69036	Soybean	nucleus	39.81	35.71
CDX79791	Canola	nucleus	41.45	35.4
PGSC0003DMT400064931	Potato	nucleus	37.94	34.84
Zm00001d020113_P001	Maize	cytosol	32.32	34.67
Solyc12g019000.1.1	Tomato	nucleus	38.17	34.46
Os03t0566500-01	Rice	nucleus, plastid	33.26	33.1
Os07t0102500-01	Rice	nucleus	33.72	32.88
AT2G43970.1	Thale cress	nucleus	41.45	32.48
Solyc12g096640.1.1	Tomato	nucleus, plastid	35.83	29.82
PGSC0003DMT400075259	Potato	nucleus	34.89	28.76

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4346201	EMBL:AK074001	ProteinID:BAD08982.1
ProteinID:BAF24310.1	ProteinID:BAT06508.1	ProteinID:EEE69086.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0542900	EnsemblPlants:Os08t0542900-01	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF54	UniProt:Q6ZJG0	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000023AC9C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_015648281.1	SEG:seg	:	:	:	:

Description

Lupus La protein family protein. (Os08t0542900-01)

Coordinates

chr8:+:27163603..27169027

Molecular Weight (calculated)

46650.8 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.850

Length

427 amino acids

Sequence
(BLAST)

001: MAQDDAPDST TSSSSASSAS APAPSAARLN AAAPEFTPRS AAHHHHHHAN PRRQHRGGGG GAYHHHQQHY QPHHHHQHHQ HWQHYGEDEG DAAAAGAVGE
101: GGIPEDVARR VVKQVEFYFS DVNLATTEHL MKFMIRDPEG FVPMSVVASF RKIRELVSER SALAAVLRTS AELVVSDDGK RVRRRVLFTE ADAEEVQSRI
201: VVAENLREEH RYPNLMKIFS AFGSVKSIRT CYPQGGIDGA GTSTGKASKI EMLFANKVHA FVEYETVEDA EKAVSEFSSG RSWRDGIRVR SLLGCLKQAM
301: GQGRRGGDEV DAADEDDPET TDHPQDYETE DASQISEAHL DHQADDGYHD KGGMRHGRGR GRGGRGRGRG QYYGHSRDAN HPIGTPPSNH SALADHPSKP
401: PPGPRMPDGT RGFTMGRGKP LNPTNAV

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.