Factsheet for Solyc10g078430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097050.2.1
Solyc04g081350.2.1
Solyc06g065680.2.1	cytosol, nucleus
Solyc07g008340.2.1
Solyc07g009140.2.1
Solyc08g022210.2.1
Solyc08g075360.1.1
Solyc09g091280.2.1
Solyc09g098280.2.1
Solyc11g040340.1.1
Solyc12g098680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03415.1	Solyc09g098280.2.1	AT1G10840.1	20706207
AT5G03415.1	Solyc12g098680.1.1	AT1G10840.1	20706207
AT5G03415.1	Solyc04g081350.2.1	AT1G47870.1	11891240
AT5G03415.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT5G03415.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT5G03415.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT5G03415.1	Solyc09g091280.2.1	AT3G12280.1	20706207
AT5G03415.1	Solyc07g008340.2.1	AT4G19210.1	20706207
AT5G03415.1	Solyc08g075360.1.1	AT4G19210.1	20706207
AT5G03415.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT5G03415.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT5G03415.1	Solyc06g065680.2.1	AT5G11300.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021592	Potato	nucleus	96.61	96.07
KRH27723	Soybean	nucleus	71.47	75.07
KRH77687	Soybean	nucleus	70.06	73.37
VIT_08s0040g01300.t01	Wine grape	nucleus	21.19	65.22
CDX80867	Canola	nucleus	55.37	61.25
AT5G03415.1	Thale cress	nucleus	66.1	60.78
Solyc09g010670.2.1	Tomato	nucleus	33.33	60.51
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	26.27	60.39
CDY44365	Canola	nucleus	57.63	59.13
VIT_08s0040g01330.t01	Wine grape	nucleus	56.78	56.46
Bra005763.1-P	Field mustard	nucleus	56.78	55.07
CDY11252	Canola	nucleus	54.8	53.74

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0042023	GO:GO:0046982	InterPro:IPR036388	InterPro:IPR038168	UniProt:K4D285	PFAM:PF02319
PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc10g078430.1	EnsemblPlants:Solyc10g078430.1.1	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI000276A247	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

Transcription factor-like protein DPB [Source:Projected from Arabidopsis thaliana (AT5G03415) UniProtKB/Swiss-Prot;Acc:Q9FNY2]

Coordinates

chr10:+:60247122..60255379

Molecular Weight (calculated)

38426.7 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.734

Length

354 amino acids

Sequence
(BLAST)

001: MLNNLEDGGK NSSEVSRGGN GRGGGGTRSW GTTVSGQSVS TSSSIGSPSS RSEAAMATPA SDNTFLRLNN LDIHADDAGS QGTAGKKKRA QRATGGDKSG
101: RGLRQFSMKV CEKVESKGRT TYNEVADELV AEFSDATNSV AGSDQKQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWK GLPRTDANDI EELKTERLNL
201: RNRIEKKAAY LEELEDQYVG LQNLIKRNDQ LYGSGNAPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDNYILKAMN FCGRSNDGSV
301: PQNVSADGGE GPSSSMANMF QHHIPNPSAP NSSGRLPTSP PLPGILKARV KHEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.