CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55548	Canola	nucleus	97.74	45.45
CDX80823	Canola	nucleus	95.49	44.56
Bra005726.1-P	Field mustard	nucleus	94.74	44.52
AT5G02470.3	Thale cress	nucleus	87.97	40.07
CDY10450	Canola	nucleus	82.71	37.67
CDY40359	Canola	nucleus	81.2	37.37
Solyc09g010670.2.1	Tomato	nucleus	42.11	28.72
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	42.11	21.54
VIT_08s0007g00170.t01	Wine grape	nucleus	47.37	16.67
GSMUA_Achr3P16470_001	Banana	nucleus	33.08	15.77
CDX80867	Canola	nucleus	35.34	14.69
CDY44365	Canola	nucleus	36.09	13.91
CDY11252	Canola	nucleus	34.59	12.74
TraesCS3D01G268600.1	Wheat	nucleus, plastid	24.81	12.64
Zm00001d011597_P002	Maize	nucleus	23.31	12.3
TraesCS3A01G268500.1	Wheat	nucleus, plastid	24.06	12.26
TraesCS3B01G302900.1	Wheat	nucleus, plastid	24.06	12.26
Os01t0678700-01	Rice	cytosol	25.56	11.56
OQU87325	Sorghum	plastid	25.56	11.41
HORVU7Hr1G037090.2	Barley	plastid	9.77	4.38
HORVU3Hr1G062470.2	Barley	mitochondrion	3.01	2.42

Protein Annotations

Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	GO:A0A078K467	UniProt:A0A078K467	EnsemblPlants:CDY72556
ProteinID:CDY72556	ProteinID:CDY72556.1	ncoils:Coil	InterPro:E2F-DP_heterodim	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00030666001
InterPro:IPR038168	PFAM:PF08781	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14	SMART:SM01138	SUPFAM:SSF144074
InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0004EE300E	SEG:seg	:

Description

BnaCnng78250DBnaCnng78250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K467]

Coordinates

chrLK051803:+:217..1234

Molecular Weight (calculated)

14782.5 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.371

Length

133 amino acids

Sequence
(BLAST)

001: MNSVQKKAVF LKELREKVSS LESLMLRNQE MVVKTEGPAE GFTLPLILLE TNPHAVVEIE ISEDMQLVHL DFNSTPFSVH DDAYILKLMQ EHKLQQNRAS
101: SSSSTHHQSQ HSSSSSCIAS GTSGPVCWNS RSS

Best Arabidopsis Sequence Match ( AT5G02470.1 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.