Factsheet for AT5G02470.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40359	Canola	nucleus	89.04	89.97
CDY10450	Canola	nucleus	89.73	89.73
Bra009586.1-P	Field mustard	nucleus	88.7	89.31
CDY72556	Canola	cytosol	40.07	87.97
Bra005726.1-P	Field mustard	nucleus	84.93	87.63
CDY55548	Canola	nucleus	84.93	86.71
CDX80823	Canola	nucleus	84.25	86.32
Solyc09g010670.2.1	Tomato	nucleus	37.67	56.41
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	40.41	45.38
VIT_08s0007g00170.t01	Wine grape	nucleus	47.6	36.77
GSMUA_Achr3P16470_001	Banana	nucleus	32.53	34.05
Zm00001d011597_P002	Maize	nucleus	28.42	32.94
TraesCS3A01G268500.1	Wheat	nucleus, plastid	28.42	31.8
TraesCS3B01G302900.1	Wheat	nucleus, plastid	28.42	31.8
TraesCS3D01G268600.1	Wheat	nucleus, plastid	28.42	31.8
AT5G03415.1	Thale cress	nucleus	38.7	29.35
Os01t0678700-01	Rice	cytosol	29.45	29.25
OQU87325	Sorghum	plastid	28.77	28.19
HORVU3Hr1G062470.2	Barley	mitochondrion	15.41	27.27
HORVU7Hr1G037090.2	Barley	plastid	19.86	19.53

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EntrezGene:830987	UniProt:A0A178ULD9
ProteinID:AED90475.1	ProteinID:AED90476.1	ProteinID:AED90477.1	EMBL:AJ294531	EMBL:AJ319027	EMBL:AK117135
ArrayExpress:AT5G02470	EnsemblPlantsGene:AT5G02470	RefSeq:AT5G02470	TAIR:AT5G02470	RefSeq:AT5G02470-TAIR-G	EnsemblPlants:AT5G02470.3
TAIR:AT5G02470.3	Unigene:At.4941	EMBL:BT005286	ProteinID:CAB85984.1	ncoils:Coil	Symbol:DPA
InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR036388	InterPro:IPR038168	RefSeq:NP_195867.2	RefSeq:NP_851027.1	RefSeq:NP_851028.1	ProteinID:OAO94638.1
PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14
UniProt:Q9FNY3	SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf
InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI000000C5C9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]

Coordinates

chr5:-:542318..544715

Molecular Weight (calculated)

33040.3 Da

IEP (calculated)

7.238

GRAVY (calculated)

-0.610

Length

292 amino acids

Sequence
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.