Factsheet for Bra009586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40359	Canola	nucleus	98.28	98.62
AT5G02470.3	Thale cress	nucleus	89.31	88.7
Bra005726.1-P	Field mustard	nucleus	83.1	85.16
Solyc09g010670.2.1	Tomato	nucleus	37.59	55.9
PGSC0003DMT400023036	Potato	cytosol, nucleus, plastid	40.34	45.0
VIT_08s0007g00170.t01	Wine grape	nucleus	46.55	35.71
GSMUA_Achr3P16470_001	Banana	nucleus	32.41	33.69
Zm00001d011597_P002	Maize	nucleus	27.93	32.14
TraesCS3B01G302900.1	Wheat	nucleus, plastid	28.28	31.42
TraesCS3D01G268600.1	Wheat	nucleus, plastid	28.28	31.42
TraesCS3A01G268500.1	Wheat	nucleus, plastid	27.93	31.03
Bra005763.1-P	Field mustard	nucleus	37.24	29.59
Os01t0678700-01	Rice	cytosol	28.97	28.57
OQU87325	Sorghum	plastid	29.31	28.52
HORVU3Hr1G062470.2	Barley	mitochondrion	15.52	27.27
HORVU7Hr1G037090.2	Barley	plastid	20.69	20.2

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EnsemblPlantsGene:Bra009586	EnsemblPlants:Bra009586.1
EnsemblPlants:Bra009586.1-P	ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168
UniProt:M4CZD9	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF14
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI0002547D13	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT5G02470 (E=2e-129) DPA | DPA; transcription factor

Coordinates

chrA10:+:17324880..17326652

Molecular Weight (calculated)

32916.2 Da

IEP (calculated)

8.015

GRAVY (calculated)

-0.663

Length

290 amino acids

Sequence
(BLAST)

001: MEMDLFVTPE KQRNHPPSVS LGKTPVRRKL IVDDDNEVVS EKKGQSRTSG GGLRQFSVMV CQKLEAKKIT TYKEVADEII SDFATIKQNA EKPLNDNEYN
101: EKNIRRRVYD ALNVFMALDI IARDKKEIRW KGLPITCKKD VEEVKMDRNK IMNSVQKKAA FLKELREKVS SLESLMSRNK EMVVKTEGPA EGFTLPFILL
201: ETNPHAVVEI EISEDMQLVH LDFNNTPFSV HDDAYILKLM QEHKQQQQQH RVSSPSSTHQ HSSAHSSSSS CIASGTSGPV CWNSGTNDNR

Best Arabidopsis Sequence Match ( AT5G02470.3 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.