CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97503	Canola	cytosol, extracellular	40.91	39.13
CDX82529	Canola	cytosol	60.0	11.87
CDX75723	Canola	cytosol	63.64	11.61
AT3G13640.1	Thale cress	cytosol	60.91	11.11
CDY60809	Canola	cytosol	57.27	10.45
CDY09282	Canola	cytosol	54.55	10.08
CDX76485	Canola	cytosol	54.55	9.92
CDX78930	Canola	cytosol	54.55	9.92
CDX98609	Canola	cytosol	54.55	9.92
CDX99388	Canola	cytosol	54.55	9.92
CDY01588	Canola	cytosol	54.55	9.92
CDY05197	Canola	cytosol	54.55	9.92
CDY63778	Canola	cytosol	40.0	9.11
CDY43728	Canola	cytosol	29.09	4.27
CDX71236	Canola	cytosol	7.27	3.0
CDY40520	Canola	cytosol	8.18	2.02
CDY53120	Canola	nucleus	7.27	1.63
CDY40521	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GEV5	UniProt:A0A078GEV5	InterPro:ABC_transporter-like	EnsemblPlants:CDY23627
ProteinID:CDY23627	ProteinID:CDY23627.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00023852001	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	SUPFAM:SSF52540	UniParc:UPI0004EBFBDE

Description

BnaC05g39670DBnaC05g39670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEV5]

Coordinates

chrLK032145:-:526810..527455

Molecular Weight (calculated)

12470.8 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.569

Length

110 amino acids

Sequence
(BLAST)

001: MGSNTPPTRE SVTDRNKTSI LMQVDAFPRE GCMPEFNVSY KPQGYDWKRE YAMRSLQIEA LLDQAVNKIS GGERQRVFIT LCLGKPADIY LIDEPSAHLD
101: SSNISHLHRS

Best Arabidopsis Sequence Match ( AT3G13640.1 )
(BLAST)

001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD

Arabidopsis Description

ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.