Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09282 | Canola | cytosol | 49.69 | 40.34 |
| CDX78930 | Canola | cytosol | 50.31 | 40.17 |
| CDY05197 | Canola | cytosol | 50.31 | 40.17 |
| CDX99388 | Canola | cytosol | 50.31 | 40.17 |
| CDY23627 | Canola | cytosol | 9.11 | 40.0 |
| CDX76485 | Canola | cytosol | 49.9 | 39.83 |
| CDX98609 | Canola | cytosol | 49.9 | 39.83 |
| CDY01588 | Canola | cytosol | 49.9 | 39.83 |
| CDY60809 | Canola | cytosol | 49.07 | 39.3 |
| CDX75723 | Canola | cytosol | 48.65 | 38.97 |
| CDY40521 | Canola | cytosol | 4.14 | 38.46 |
| CDX97503 | Canola | cytosol, extracellular | 9.11 | 38.26 |
| CDX82529 | Canola | cytosol | 42.86 | 37.23 |
| CDX71236 | Canola | cytosol | 13.46 | 24.34 |
| CDY43728 | Canola | cytosol | 28.36 | 18.27 |
| CDY53120 | Canola | nucleus | 16.56 | 16.29 |
| CDY40520 | Canola | cytosol | 13.04 | 14.13 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078JC13 | UniProt:A0A078JC13 | InterPro:AAA+_ATPase | InterPro:ABC_transporter-like |
| EnsemblPlants:CDY63778 | ProteinID:CDY63778 | ProteinID:CDY63778.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | GO:GO:0016887 | EnsemblPlantsGene:GSBRNA2T00039626001 | InterPro:IPR003439 |
| InterPro:P-loop_NTPase | PFAM:PF00005 | PRINTS:PR01868 | PFscan:PS50893 | PANTHER:PTHR19248 | PANTHER:PTHR19248:SF21 |
| InterPro:RLI1 | SMART:SM00382 | SUPFAM:SSF52540 | UniParc:UPI0004EF2733 | SEG:seg | : |
Description
BnaCnng42650DBnaCnng42650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC13]
Coordinates
chrLK034352:+:948..3349
Molecular Weight (calculated)
54848.6 Da
IEP (calculated)
9.072
GRAVY (calculated)
-0.229
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRIRSDYR DQREPECMEG PAVILKIVDL PKDLDKDTIH SYGPDSFKLH RFPLPVPGKV LGLVGPHSVG KTTALKVLAR ELKPNFGRFD DSPDWPEIWT
101: HFHRFELQRY FQILNMNLKV VFKPQQVPDF LIGQSRVPAE VLERVTLAIA LLQKANVYIF DEISNSLDVH HRFKVAQLIR SLIRPDSYVI VVDNDLSVVD
201: YVSDYMYCLY GEPGEYGVFA KKGWHVKAGI EHYLRGFDPV EKNLIRGEPL IFELEVKGGE FDDGQILLVL GDNGTGKSTF IRMLADLLPP DQVVAVQPWR
301: PNFLPSYKPQ KNELGSECTV RLLLERKRPI AKMHSRFVSD VMKPLQIYPL LDRKVATLSP GETQRVAITL CLATNANVYL IDEPSAYLDS DMRIKAAMAI
401: RRHVLRAGES RSDKVILAER TPSAKFATSS PYPRVTGLDL FLKKMNMTFR RDTDTFRFTP RVNILGSAED KDQKAAGVYY GLA
101: HFHRFELQRY FQILNMNLKV VFKPQQVPDF LIGQSRVPAE VLERVTLAIA LLQKANVYIF DEISNSLDVH HRFKVAQLIR SLIRPDSYVI VVDNDLSVVD
201: YVSDYMYCLY GEPGEYGVFA KKGWHVKAGI EHYLRGFDPV EKNLIRGEPL IFELEVKGGE FDDGQILLVL GDNGTGKSTF IRMLADLLPP DQVVAVQPWR
301: PNFLPSYKPQ KNELGSECTV RLLLERKRPI AKMHSRFVSD VMKPLQIYPL LDRKVATLSP GETQRVAITL CLATNANVYL IDEPSAYLDS DMRIKAAMAI
401: RRHVLRAGES RSDKVILAER TPSAKFATSS PYPRVTGLDL FLKKMNMTFR RDTDTFRFTP RVNILGSAED KDQKAAGVYY GLA
001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
Arabidopsis Description
ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.