Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40521 | Canola | cytosol | 6.72 | 63.46 |
| CDX71236 | Canola | cytosol | 31.16 | 57.3 |
| CDY40520 | Canola | cytosol | 42.97 | 47.31 |
| CDX75723 | Canola | cytosol | 45.82 | 37.31 |
| CDX82529 | Canola | cytosol | 41.14 | 36.33 |
| CDY60809 | Canola | cytosol | 39.51 | 32.17 |
| CDX78930 | Canola | cytosol | 35.23 | 28.59 |
| CDX99388 | Canola | cytosol | 35.23 | 28.59 |
| CDY05197 | Canola | cytosol | 35.23 | 28.59 |
| CDY01588 | Canola | cytosol | 34.83 | 28.26 |
| CDX76485 | Canola | cytosol | 34.83 | 28.26 |
| CDX98609 | Canola | cytosol | 34.62 | 28.1 |
| CDY09282 | Canola | cytosol | 34.01 | 28.07 |
| CDY63778 | Canola | cytosol | 16.29 | 16.56 |
| CDY43728 | Canola | cytosol | 13.03 | 8.53 |
| CDY23627 | Canola | cytosol | 1.63 | 7.27 |
| CDX97503 | Canola | cytosol, extracellular | 1.02 | 4.35 |
Protein Annotations
| EnsemblPlants:CDY53120 | EnsemblPlantsGene:GSBRNA2T00008630001 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | InterPro:RLI1 | PANTHER:PTHR19248 |
| PANTHER:PTHR19248:SF21 | PRINTS:PR01868 | ProteinID:CDY53120 | ProteinID:CDY53120.1 | SUPFAM:SSF52540 | UniParc:UPI0004EE9DC4 |
| UniProt:A0A078IPW7 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng24480DBnaCnng24480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPW7]
Coordinates
chrLK033166:-:34425..38522
Molecular Weight (calculated)
54636.5 Da
IEP (calculated)
10.002
GRAVY (calculated)
-0.256
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIQNKMFHE ATEHQSIGTT KAGIHEDVSA DLTSVLSEEK VRPKNPSSRR KEVVDAKERS SIGDLNNFLS NFNDQLPNRL PTKFKSVSPL NYKFLMARIV
101: ESLSQKTKMA GTICLALAAA KKLNRSPASL RCKPATNKRI KAIGRVDVPQ EAFMALKLEK EINAAKSAGR AVLSSRLGNF LCIGCVRFSD VKSQKSPFQA
201: IQIINLPKDL EKDTIHCYNS NGFKLHRVPV PRPGKLSKSW LEKSNQTLAD TIILLIGMKF GSLPWIRETK GMCYEATTCG CYEKIAKGTL GMVLEKLEER
301: GMMSEICDAM DLNHLLDREA TQVSGGELQR FSIAAVCLKK PDIYVFNKPS NFLDVRQRLR AAEVICSLLK HDKFGSIISL PTAYGVVTLP FSVREGINVF
401: LAGFVPTENF RFRDESLTFK VSDKTQESEG KVKSYARYKY PNMCKKLGNF KLDVMEGEFT ASQIIVMLGE NGTGKTIFIR TLVTSGQGST S
101: ESLSQKTKMA GTICLALAAA KKLNRSPASL RCKPATNKRI KAIGRVDVPQ EAFMALKLEK EINAAKSAGR AVLSSRLGNF LCIGCVRFSD VKSQKSPFQA
201: IQIINLPKDL EKDTIHCYNS NGFKLHRVPV PRPGKLSKSW LEKSNQTLAD TIILLIGMKF GSLPWIRETK GMCYEATTCG CYEKIAKGTL GMVLEKLEER
301: GMMSEICDAM DLNHLLDREA TQVSGGELQR FSIAAVCLKK PDIYVFNKPS NFLDVRQRLR AAEVICSLLK HDKFGSIISL PTAYGVVTLP FSVREGINVF
401: LAGFVPTENF RFRDESLTFK VSDKTQESEG KVKSYARYKY PNMCKKLGNF KLDVMEGEFT ASQIIVMLGE NGTGKTIFIR TLVTSGQGST S
001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
Arabidopsis Description
ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.