CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53120	Canola	nucleus	63.46	6.72
CDX82529	Canola	cytosol	69.23	6.47
CDX75723	Canola	cytosol	67.31	5.8
CDY60809	Canola	cytosol	63.46	5.47
CDY01588	Canola	cytosol	63.46	5.45
CDY05197	Canola	cytosol	63.46	5.45
CDX99388	Canola	cytosol	63.46	5.45
CDX98609	Canola	cytosol	63.46	5.45
CDX78930	Canola	cytosol	63.46	5.45
CDX76485	Canola	cytosol	63.46	5.45
CDY09282	Canola	cytosol	61.54	5.38
CDY63778	Canola	cytosol	38.46	4.14
CDY43728	Canola	cytosol	36.54	2.53
CDX71236	Canola	cytosol	0.0	0.0
CDX97503	Canola	cytosol, extracellular	0.0	0.0
CDY23627	Canola	cytosol	0.0	0.0
CDY40520	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY40521	EnsemblPlantsGene:GSBRNA2T00069825001	InterPro:P-loop_NTPase	InterPro:RLI1	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21
ProteinID:CDY40521	ProteinID:CDY40521.1	SUPFAM:SSF52540	UniParc:UPI0004EF097D	UniProt:A0A078HS57	MapMan:35.2

Description

BnaC01g19910DBnaC01g19910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS57]

Coordinates

chrLK032473:+:160189..163067

Molecular Weight (calculated)

5700.0 Da

IEP (calculated)

9.954

GRAVY (calculated)

-0.054

Length

52 amino acids

Sequence
(BLAST)

1: MSKKLGNFTL DVMEGEFTHY KKTTIIVMLG ENGTGKTIFI RMLVTSGQGS TS

Best Arabidopsis Sequence Match ( AT3G13640.1 )
(BLAST)

001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD

Arabidopsis Description

ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.