Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71236 | Canola | cytosol | 28.25 | 47.19 |
| CDY53120 | Canola | nucleus | 47.31 | 42.97 |
| CDX75723 | Canola | cytosol | 36.55 | 27.03 |
| CDX82529 | Canola | cytosol | 31.17 | 25.0 |
| CDY60809 | Canola | cytosol | 30.94 | 22.89 |
| CDX78930 | Canola | cytosol | 28.48 | 20.99 |
| CDY05197 | Canola | cytosol | 28.48 | 20.99 |
| CDX99388 | Canola | cytosol | 28.48 | 20.99 |
| CDY01588 | Canola | cytosol | 28.25 | 20.83 |
| CDX76485 | Canola | cytosol | 28.25 | 20.83 |
| CDX98609 | Canola | cytosol | 28.03 | 20.66 |
| CDY09282 | Canola | cytosol | 27.35 | 20.5 |
| CDY63778 | Canola | cytosol | 14.13 | 13.04 |
| CDY23627 | Canola | cytosol | 2.02 | 8.18 |
| CDY43728 | Canola | cytosol | 9.64 | 5.73 |
| CDX97503 | Canola | cytosol, extracellular | 1.12 | 4.35 |
| CDY40521 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HPS1 | UniProt:A0A078HPS1 | InterPro:ABC_transporter-like | EnsemblPlants:CDY40520 | ProteinID:CDY40520 |
| ProteinID:CDY40520.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | GO:GO:0016887 | EnsemblPlantsGene:GSBRNA2T00069824001 | InterPro:IPR003439 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFscan:PS50893 | PANTHER:PTHR19248 | PANTHER:PTHR19248:SF21 | InterPro:RLI1 | SUPFAM:SSF52540 | UniParc:UPI0004EE1E29 |
Description
BnaC01g19920DBnaC01g19920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPS1]
Coordinates
chrLK032473:+:156896..160090
Molecular Weight (calculated)
49728.6 Da
IEP (calculated)
10.145
GRAVY (calculated)
-0.190
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVMDSDGE TEEDVSADLT SVLNEDKVRP KNPSSRRKEV VDAKERSSIG DLNNFLSNFN DQVPNRLPTK FKSVSPLNYN IKWYIFSLAY FICKARIVES
101: LSQKAKMAGT ICLALAAAKK LNRSPASLRC KPATNKRMKA IGRVDVPQEA FMALKLEKEI NAAKSAGRAV LSSRLLRFFG NFVLRVPVPR PGKVLGLVGT
201: NCILKSTALQ ILAGKIKPNL GRYNGSSAKT GKSPRFDWNK LYWEIYSSPN LGQEKSNQTL ADTIILLIGM KFGSLPWIRT SKLFHPSCRR ETKGMCYEAT
301: TCGCYEKSAK GTLGMVLEKL DERGMMSEIC DAMDLNHHVL DREATQVSGG ELQRFSIAAV CLKKPDIYVF NKPFNFLDVR HRLRAAEVIC SLLKHDKFGS
401: MISLPTAYGV VTLPFSVREG INVFLAGFVP TENLRFRDES LNFKIL
101: LSQKAKMAGT ICLALAAAKK LNRSPASLRC KPATNKRMKA IGRVDVPQEA FMALKLEKEI NAAKSAGRAV LSSRLLRFFG NFVLRVPVPR PGKVLGLVGT
201: NCILKSTALQ ILAGKIKPNL GRYNGSSAKT GKSPRFDWNK LYWEIYSSPN LGQEKSNQTL ADTIILLIGM KFGSLPWIRT SKLFHPSCRR ETKGMCYEAT
301: TCGCYEKSAK GTLGMVLEKL DERGMMSEIC DAMDLNHHVL DREATQVSGG ELQRFSIAAV CLKKPDIYVF NKPFNFLDVR HRLRAAEVIC SLLKHDKFGS
401: MISLPTAYGV VTLPFSVREG INVFLAGFVP TENLRFRDES LNFKIL
001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD
Arabidopsis Description
ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.