CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53120	Canola	nucleus	57.3	31.16
CDX75723	Canola	cytosol	65.54	29.02
CDY40520	Canola	cytosol	47.19	28.25
CDX82529	Canola	cytosol	54.68	26.26
CDY60809	Canola	cytosol	55.43	24.54
CDY05197	Canola	cytosol	53.56	23.64
CDX99388	Canola	cytosol	53.56	23.64
CDX78930	Canola	cytosol	53.56	23.64
CDY01588	Canola	cytosol	52.81	23.31
CDX76485	Canola	cytosol	52.81	23.31
CDX98609	Canola	cytosol	52.43	23.14
CDY09282	Canola	cytosol	51.31	23.03
CDY63778	Canola	cytosol	24.34	13.46
CDY23627	Canola	cytosol	3.0	7.27
CDY43728	Canola	cytosol	19.1	6.8
CDX97503	Canola	cytosol, extracellular	2.62	6.09
AT4G30300.1	Thale cress	cytosol	0.0	0.0
CDY40521	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX71236	EnsemblPlantsGene:GSBRNA2T00144821001	Gene3D:3.40.50.300	InterPro:RLI1	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21
PRINTS:PR01868	ProteinID:CDX71236	ProteinID:CDX71236.1	UniParc:UPI0004EE1B2E	MapMan:35.1	:

Description

BnaC07g05150D

Coordinates

chrLK031792:+:1577182..1580225

Molecular Weight (calculated)

30108.5 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.265

Length

267 amino acids

Sequence
(BLAST)

001: MKTIGRVDVP QEAFKLEKEC RKSCPVVKTG KLCIEVTPTS NTAFLSEELC IGCVKFSDVK SQKSPFQAIQ IINLPKDLEK DTIHCYNSNG FKLHRVPVPR
101: PGKVLGLVGT NCILKSTALQ ILAGKIKPNL GRYNNPPDWH EIWLTFFHPY CRRETKGTLG MVLEKLDERG MMSEICDAMD LNHLLDREAT QHDLSVLDYL
201: SDFVCCLYGK PTAYGVVTLP FSVREGINVF LSGFVPSENL RFRDESLNFK VSDKPQESEG KVKSYAR

Best Arabidopsis Sequence Match ( AT3G13640.1 )
(BLAST)

001: MSDRLTRIAI VSEDRCKPKK CRQECKKSCP VVKTGKLCIE VGSTSKSAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLA KDTTHRYGAN GFKLHRLPIP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFNTPPDW EEILTHFRGS ELQSYFIRVV EENLKTAIKP QHVDYIKEVV RGNLGKMLEK LDERGLMEEI
201: CADMELNQVL EREARQVSGG ELQRFAIAAV FVKKADIYMF DEPSSYLDVR QRLKAAQVIR SLLRHDSYVI VVEHDLSVLD YLSDFVCCLY GKPGAYGVVT
301: LPFSVREGIN VFLAGFIPTE NLRFRDESLT FRVSETTQEN DGEVKSYARY KYPNMTKQLG DFKLEVMEGE FTDSQIIVML GENGTGKTTF IRMLAGAFPR
401: EEGVQSEIPE FNVSYKPQGN DSKRECTVRQ LLHDKIRDAC AHPQFMSDVI RPLQIEQLMD QVVKTLSGGE KQRVAITLCL GKPADIYLID EPSAHLDSEQ
501: RITASKVIKR FILHAKKTAF IVEHDFIMAT YLADRVIVYE GQPAVKCIAH SPQSLLSGMN HFLSHLNITF RRDPTNFRPR INKLESIKDK EQKTAGSYYY
601: LDD

Arabidopsis Description

ABCE1ABC transporter E family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.