Factsheet for TraesCS7B01G286300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	TraesCS6A01G326100.1	AT2G32950.1	17965270
AT1G75540.1	TraesCS6B01G356400.1	AT2G32950.1	17965270
AT1G75540.1	TraesCS6D01G305800.1	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G379900.1	Wheat	nucleus	88.42	96.49
TraesCS7A01G383400.3	Wheat	nucleus	92.28	91.69
HORVU7Hr1G091180.1	Barley	nucleus	80.06	90.55
Os06t0713000-01	Rice	nucleus	64.63	65.26
Zm00001d036418_P001	Maize	nucleus	53.7	62.08
EER90373	Sorghum	cytosol	59.16	60.33
GSMUA_Achr11P...	Banana	cytosol	33.12	52.02
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.84	51.55
GSMUA_Achr11P...	Banana	nucleus	30.23	50.81
TraesCS6B01G285200.1	Wheat	nucleus	33.76	44.12
CDY41957	Canola	nucleus	28.3	41.51
TraesCS2B01G406600.2	Wheat	nucleus	35.05	41.13
CDY42602	Canola	nucleus	30.23	40.17
Solyc01g110180.2.1	Tomato	nucleus	26.05	39.9
Bra011879.1-P	Field mustard	nucleus	30.23	39.33
KRH51757	Soybean	nucleus	30.87	39.18
KRH17384	Soybean	nucleus	34.41	38.77
CDY12117	Canola	nucleus	29.26	37.6
Bra010713.1-P	Field mustard	nucleus	28.94	37.34
CDX90306	Canola	nucleus	28.94	37.34
AT4G39070.1	Thale cress	cytosol	28.94	37.19
KRH61078	Soybean	nucleus	31.51	36.84
KRH51476	Soybean	nucleus	26.69	35.62
VIT_18s0001g13520.t01	Wine grape	nucleus	34.08	34.98
Solyc04g081020.2.1	Tomato	nucleus	33.12	34.45
PGSC0003DMT400009514	Potato	nucleus	32.8	34.23
Bra008204.1-P	Field mustard	nucleus	32.48	33.44
PGSC0003DMT400079507	Potato	nucleus	27.01	33.33
CDY39040	Canola	nucleus	30.87	32.65
KRH29378	Soybean	nucleus	30.23	32.64
KRH05902	Soybean	nucleus	33.76	32.11
CDY13564	Canola	nucleus	31.19	32.01
PGSC0003DMT400075652	Potato	nucleus	33.76	31.82
Solyc12g089240.1.1	Tomato	nucleus	33.44	31.61
CDY47514	Canola	nucleus	32.48	31.46
Bra015835.1-P	Field mustard	nucleus	32.48	31.46
CDX68124	Canola	nucleus	32.15	31.35
CDX85903	Canola	nucleus	31.83	31.03
Bra003748.1-P	Field mustard	nucleus	31.83	31.03
CDX73178	Canola	nucleus	31.83	30.75
AT1G75540.1	Thale cress	nucleus	32.48	30.51
VIT_03s0038g00340.t01	Wine grape	nucleus	29.26	30.13
KRH24393	Soybean	nucleus	18.97	28.78
TraesCS6B01G172300.1	Wheat	nucleus	19.61	28.5
TraesCS6B01G246500.1	Wheat	extracellular	23.47	28.08
KRH60788	Soybean	nucleus	27.33	26.65
TraesCS2B01G367300.2	Wheat	nucleus	21.54	25.97
TraesCS7B01G006400.1	Wheat	nucleus	27.01	24.85
TraesCS5B01G317700.1	Wheat	cytosol	16.4	24.17
TraesCS3B01G156900.1	Wheat	nucleus	25.72	22.92

Protein Annotations

EnsemblPlants:TraesCS7B01G286300.1	EnsemblPlantsGene:TraesCS7B01G286300	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31832
PANTHER:PTHR31832:SF11	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	TIGR:cd00021
MapMan:15.5.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:521578094..521579125

Molecular Weight (calculated)

33197.1 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.195

Length

311 amino acids

Sequence
(BLAST)

001: MRVQCDVCGL EPAAVLCCAD EAALCSPCNR RVHRANKLAG KHRRLTLLQP SPAANDAAAP LCDVCKERRG LVFCVEDRAI LCADCDEPIH SANELTAKHS
101: RFLLVGAKLS ADPVDQEIPS PDGSSVEQDD CSASAAEEAP AVHDASHAGG GGGGSSISDY LTNICPGWQV DELLFDDAAF VAVSRRPSLY PVLSTAAYVR
201: KLNAKTFALG QKQKGRDEQV PFLDADLFDV VAAERPGKRG AWAPHVPHTP VPAWGLQEFP AALVAPAAAA KAKQGHVREW YHSDSDSDVF AVPEITSPPA
301: KRARPSSFWC L

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.