Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005541.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | Bra005541.1-P | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68124 | Canola | nucleus | 98.75 | 98.75 |
| Bra008204.1-P | Field mustard | nucleus | 81.5 | 86.09 |
| Bra015835.1-P | Field mustard | nucleus | 84.64 | 84.11 |
| AT1G75540.1 | Thale cress | nucleus | 84.64 | 81.57 |
| KRH17384 | Soybean | nucleus | 46.08 | 53.26 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 50.47 | 53.14 |
| PGSC0003DMT400009514 | Potato | nucleus | 46.71 | 50.0 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 28.84 | 49.46 |
| Zm00001d017412_P001 | Maize | nucleus | 21.94 | 49.3 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 31.35 | 49.26 |
| Solyc04g081020.2.1 | Tomato | nucleus | 46.08 | 49.16 |
| KRH51757 | Soybean | nucleus | 37.62 | 48.98 |
| GSMUA_Achr11P... | Banana | cytosol | 29.47 | 47.47 |
| GSMUA_Achr11P... | Banana | nucleus | 26.96 | 46.49 |
| Bra011879.1-P | Field mustard | nucleus | 34.8 | 46.44 |
| KRH61078 | Soybean | nucleus | 38.24 | 45.86 |
| Bra010713.1-P | Field mustard | nucleus | 34.48 | 45.64 |
| KRH05902 | Soybean | nucleus | 46.08 | 44.95 |
| Solyc12g089240.1.1 | Tomato | nucleus | 46.08 | 44.68 |
| PGSC0003DMT400075652 | Potato | nucleus | 46.08 | 44.55 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 31.03 | 41.95 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 31.03 | 41.6 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 30.72 | 41.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.42 | 40.65 |
| GSMUA_Achr11P... | Banana | nucleus | 32.92 | 40.08 |
| Os04t0540200-01 | Rice | nucleus | 30.72 | 39.2 |
| Os02t0646200-01 | Rice | nucleus | 32.29 | 38.29 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 30.72 | 37.98 |
| Zm00001d025957_P001 | Maize | nucleus | 30.41 | 37.89 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 30.72 | 37.4 |
| Zm00001d002806_P001 | Maize | nucleus | 30.09 | 37.21 |
| Zm00001d051309_P001 | Maize | nucleus | 32.29 | 37.18 |
| OQU82040 | Sorghum | nucleus | 30.72 | 36.98 |
| EES07539 | Sorghum | nucleus | 33.23 | 35.93 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 29.78 | 35.85 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 30.09 | 34.91 |
| Bra032441.1-P | Field mustard | nucleus | 25.08 | 34.19 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 30.41 | 34.04 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 30.41 | 34.04 |
| Bra030635.1-P | Field mustard | nucleus | 25.39 | 33.61 |
| Bra015469.1-P | Field mustard | nucleus | 25.08 | 32.92 |
| Os06t0713000-01 | Rice | nucleus | 31.66 | 32.79 |
| Zm00001d036418_P001 | Maize | nucleus | 27.27 | 32.34 |
| Bra021734.1-P | Field mustard | nucleus | 24.14 | 32.08 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 31.03 | 31.83 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 31.03 | 31.63 |
| Bra010718.1-P | Field mustard | cytosol | 17.24 | 30.56 |
| Bra018249.1-P | Field mustard | nucleus | 23.2 | 30.45 |
| EER90373 | Sorghum | cytosol | 28.84 | 30.16 |
| Bra035051.1-P | Field mustard | nucleus | 27.27 | 29.79 |
| Bra031180.1-P | Field mustard | cytosol | 17.55 | 29.79 |
| Bra008371.1-P | Field mustard | nucleus | 26.96 | 29.55 |
| Bra033588.1-P | Field mustard | cytosol | 16.61 | 29.12 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 35.11 | 28.57 |
| Bra003640.1-P | Field mustard | nucleus | 25.71 | 28.47 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 32.6 | 27.15 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.78 | 26.76 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EnsemblPlantsGene:Bra003748 | EnsemblPlants:Bra003748.1 | EnsemblPlants:Bra003748.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009641 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000315 |
| UniProt:M4CHR5 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | SMART:SM00336 |
| SUPFAM:SSF57845 | UniParc:UPI00025415CA | InterPro:Znf_B-box | SEG:seg | : | : |
Description
AT1G75540 (E=8e-127) STH2 | STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding
Coordinates
chrA07:-:14838832..14840109
Molecular Weight (calculated)
35433.1 Da
IEP (calculated)
7.056
GRAVY (calculated)
-0.729
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNNSSPVC DICQEKKALL FCQQDRAILC KDCDTSIHSA NEHKKKHDRF
101: LLTGVKLSAT SSVYKPTSGS SSSSSQDCSV PSKKPLSAPQ SNTSKIQLSS KIGGDSEVSQ WGSTSTVSEY LIDTLPGWHV EDFLDSSLPP FGFSKSGHDD
201: GVLPYIEAED DSTKRKNYNT VSLPSENLGI WVPQIPQTLP SSYTNQYFSQ ENNNNNIQFG MYNNKEKSPE EKTYAPIQNM KQQGQNKRWY DDGGFTVPQI
301: TTTLSHPPLH SNKKSRAFW
101: LLTGVKLSAT SSVYKPTSGS SSSSSQDCSV PSKKPLSAPQ SNTSKIQLSS KIGGDSEVSQ WGSTSTVSEY LIDTLPGWHV EDFLDSSLPP FGFSKSGHDD
201: GVLPYIEAED DSTKRKNYNT VSLPSENLGI WVPQIPQTLP SSYTNQYFSQ ENNNNNIQFG MYNNKEKSPE EKTYAPIQNM KQQGQNKRWY DDGGFTVPQI
301: TTTLSHPPLH SNKKSRAFW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.