Factsheet for Bra003640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69214	Canola	nucleus	98.26	98.26
Bra035051.1-P	Field mustard	nucleus	87.85	86.64
Bra008371.1-P	Field mustard	nucleus	86.11	85.22
AT1G78600.2	Thale cress	nucleus	82.64	74.61
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	18.06	72.22
Solyc07g062160.2.1	Tomato	nucleus	55.9	54.03
PGSC0003DMT400018196	Potato	nucleus	55.56	53.69
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.82	52.9
KRH21881	Soybean	nucleus	53.47	52.56
PGSC0003DMT400048964	Potato	nucleus	49.65	47.83
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	46.53	47.52
GSMUA_Achr6P21590_001	Banana	nucleus	48.26	46.33
GSMUA_Achr6P14750_001	Banana	nucleus	47.22	45.03
KRH27404	Soybean	extracellular, vacuole	53.47	41.18
TraesCS7B01G006400.1	Wheat	nucleus	45.14	38.46
TraesCS7A01G108400.1	Wheat	nucleus	45.49	36.49
Os06t0152200-01	Rice	nucleus	45.14	36.11
TraesCS7D01G103300.1	Wheat	nucleus	45.14	35.81
KXG19323	Sorghum	nucleus	45.14	34.67
Bra032441.1-P	Field mustard	nucleus	28.12	34.62
Bra015469.1-P	Field mustard	nucleus	29.17	34.57
Bra018249.1-P	Field mustard	nucleus	28.82	34.16
Bra030635.1-P	Field mustard	nucleus	28.47	34.02
Bra021734.1-P	Field mustard	nucleus	28.12	33.75
Bra033588.1-P	Field mustard	cytosol	21.18	33.52
Zm00001d036214_P001	Maize	nucleus	44.79	33.42
Bra010718.1-P	Field mustard	cytosol	20.49	32.78
Bra031180.1-P	Field mustard	cytosol	21.18	32.45
Zm00001d045323_P004	Maize	nucleus	46.18	31.52
HORVU7Hr1G023100.2	Barley	plastid	43.75	31.34
Bra011879.1-P	Field mustard	nucleus	24.65	29.71
Bra010713.1-P	Field mustard	nucleus	24.65	29.46
Bra008204.1-P	Field mustard	nucleus	28.82	27.48
Bra015835.1-P	Field mustard	nucleus	30.21	27.1
Bra003748.1-P	Field mustard	nucleus	28.47	25.71

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EnsemblPlantsGene:Bra003640	EnsemblPlants:Bra003640.1	EnsemblPlants:Bra003640.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315
UniProt:M4CHF7	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336
UniParc:UPI0002541452	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

AT1G78600 (E=8e-102) LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding

Coordinates

chrA07:-:14191029..14192110

Molecular Weight (calculated)

31363.3 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.644

Length

288 amino acids

Sequence
(BLAST)

001: MKIQCNVCET AEAAVLCCAD EAALCLACDE KVHTANKLAG KHQRVPLSVS SSSKPKCDIC QEATGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIRVGLESTT DTGPSTPSND DKTNERKPPT SEPQKLDLDH HNHQVGLPET KVSDHISTKL PIASSGSAAT GSISQWQIDE IFGLTDFDQS YEYMENNGSS
201: KADTSRRGDS DSSSMMRSGE EDGEDNSNCL GGGETSWAVP QIHSPPTASG LNWPRHFNHH SMFVPHLSSS THNTGSSPNQ RVGKRRRF

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.