Factsheet for PGSC0003DMT400018196

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062160.2.1	Tomato	nucleus	96.98	96.98
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	16.78	69.44
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.78	67.92
PGSC0003DMT400048964	Potato	nucleus	67.45	67.22
KRH21881	Soybean	nucleus	61.07	62.12
Bra035051.1-P	Field mustard	nucleus	56.38	57.53
CDX87448	Canola	nucleus	56.38	57.53
CDY11657	Canola	nucleus	56.04	56.61
Bra008371.1-P	Field mustard	nucleus	55.03	56.36
CDY14607	Canola	nucleus	55.03	56.36
CDX88458	Canola	nucleus	55.7	56.27
CDX79268	Canola	nucleus	54.03	55.9
Bra003640.1-P	Field mustard	nucleus	53.69	55.56
CDY69214	Canola	nucleus	53.69	55.56
CDY26870	Canola	nucleus	55.03	54.67
AT1G78600.2	Thale cress	nucleus	54.36	50.78
GSMUA_Achr6P21590_001	Banana	nucleus	50.67	50.33
KRH27404	Soybean	extracellular, vacuole	61.41	48.93
GSMUA_Achr6P14750_001	Banana	nucleus	46.31	45.7
TraesCS7B01G006400.1	Wheat	nucleus	47.99	42.31
TraesCS7A01G108400.1	Wheat	nucleus	48.66	40.39
Os06t0152200-01	Rice	nucleus	48.66	40.28
TraesCS7D01G103300.1	Wheat	nucleus	48.99	40.22
PGSC0003DMT400069498	Potato	nucleus	29.87	38.2
KXG19323	Sorghum	nucleus	47.99	38.13
Zm00001d036214_P001	Maize	nucleus	47.65	36.79
HORVU7Hr1G023100.2	Barley	plastid	47.32	35.07
Zm00001d045323_P004	Maize	nucleus	49.33	34.83
PGSC0003DMT400009328	Potato	cytosol	20.13	32.97
PGSC0003DMT400009514	Potato	nucleus	31.21	31.21
PGSC0003DMT400008044	Potato	cytosol	21.81	30.66
PGSC0003DMT400079507	Potato	nucleus	24.16	28.57
PGSC0003DMT400075652	Potato	nucleus	30.2	27.27

Protein Annotations

EntrezGene:102587821	MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	EMBL:KX576528	UniProt:M1AA75
PFAM:PF00643	EnsemblPlantsGene:PGSC0003DMG400007061	PGSC:PGSC0003DMG400007061	EnsemblPlants:PGSC0003DMT400018196	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF31	SMART:SM00336	UniParc:UPI0002963F9F	RefSeq:XP_006348330.1	InterPro:Znf_B-box	SEG:seg

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007061]

Coordinates

chr7:+:52313046..52318239

Molecular Weight (calculated)

32137.6 Da

IEP (calculated)

4.678

GRAVY (calculated)

-0.336

Length

298 amino acids

Sequence
(BLAST)

001: MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT
101: GVKVGLEPVD PGGISSSATS QSIQKVSEPE SAPLSKRNAP VSLDAQFNKV LPTQASGVGD FAPTKSPFAG GSAAGSMPQW QFDEFIGLSD FNQNYGYMDD
201: GSYKADNGKL GGESDSSSIL RIEDEELDGD EFLGQVPDTS WAVPQVPSPP TASGLYWPKT YQNPFDSAVF VPDISYSPSS SLQQQPPIGT RLKRRRQC

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.