Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37922 | Soybean | nucleus | 75.77 | 76.03 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 18.09 | 73.61 |
| KRH27404 | Soybean | extracellular, vacuole | 92.49 | 72.46 |
| Solyc07g062160.2.1 | Tomato | nucleus | 62.46 | 61.41 |
| PGSC0003DMT400018196 | Potato | nucleus | 62.12 | 61.07 |
| PGSC0003DMT400048964 | Potato | nucleus | 56.66 | 55.52 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.24 | 55.32 |
| Bra008371.1-P | Field mustard | nucleus | 54.27 | 54.64 |
| CDY14607 | Canola | nucleus | 53.92 | 54.3 |
| Bra035051.1-P | Field mustard | nucleus | 53.92 | 54.11 |
| CDX87448 | Canola | nucleus | 53.92 | 54.11 |
| CDX79268 | Canola | nucleus | 52.9 | 53.82 |
| CDX88458 | Canola | nucleus | 53.92 | 53.56 |
| CDY11657 | Canola | nucleus | 53.92 | 53.56 |
| Bra003640.1-P | Field mustard | nucleus | 52.56 | 53.47 |
| CDY69214 | Canola | nucleus | 52.56 | 53.47 |
| CDY26870 | Canola | nucleus | 53.92 | 52.67 |
| AT1G78600.2 | Thale cress | nucleus | 52.9 | 48.59 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 49.49 | 48.33 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 47.44 | 46.03 |
| KRH24617 | Soybean | nucleus | 33.45 | 41.18 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 46.76 | 40.53 |
| KRH29616 | Soybean | nucleus | 32.76 | 40.34 |
| Os06t0152200-01 | Rice | nucleus | 49.15 | 40.0 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 47.44 | 38.72 |
| KXG19323 | Sorghum | nucleus | 49.49 | 38.67 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 47.78 | 38.57 |
| KRH23214 | Soybean | nucleus | 30.72 | 37.66 |
| Zm00001d036214_P001 | Maize | nucleus | 48.46 | 36.79 |
| Zm00001d045323_P004 | Maize | nucleus | 49.49 | 34.36 |
| HORVU7Hr1G023100.2 | Barley | plastid | 46.08 | 33.58 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.82 | 31.61 |
| KRH17384 | Soybean | nucleus | 29.69 | 31.52 |
| KRH51757 | Soybean | nucleus | 25.94 | 31.02 |
| KRH24373 | Soybean | nucleus | 21.84 | 30.19 |
| KRH51476 | Soybean | nucleus | 23.89 | 30.04 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.5 | 30.0 |
| KRH61078 | Soybean | nucleus | 26.96 | 29.7 |
| KRH29344 | Soybean | nucleus | 21.16 | 29.25 |
| KRH29378 | Soybean | nucleus | 28.33 | 28.82 |
| KRH05902 | Soybean | nucleus | 29.01 | 25.99 |
| KRH24393 | Soybean | nucleus | 17.41 | 24.88 |
| KRH60788 | Soybean | nucleus | 25.6 | 23.51 |
| KRH10122 | Soybean | nucleus | 30.72 | 22.96 |
Protein Annotations
| EntrezGene:100790959 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | UniProt:A0A0R0H359 | EMBL:ACUP02008367 | EnsemblPlantsGene:GLYMA_13G265000 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 |
| GO:GO:0046872 | InterPro:IPR000315 | ProteinID:KRH21880.1 | EnsemblPlants:KRH21881 | ProteinID:KRH21881 | ProteinID:KRH21881.1 |
| PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF31 | SMART:SM00336 | UniParc:UPI000189D23D |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:36804691..36808953
Molecular Weight (calculated)
31957.4 Da
IEP (calculated)
4.514
GRAVY (calculated)
-0.330
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC QEALGYFFCL EDRALLCRKC DVAIHTANAY VSGHQRFLLT
101: GVRVGLEAID PGASLTSLKS DSGEKVSDTK SSSVSRKVST VPQPSNYNEV LPIEVGGVGE FPPAKVSFGG GSTDGNISQW TIDEFIGLNE FSQHYDYMEG
201: SSRADGGKLG DSDSPVLKSG EEDMEEEDDY LERVPDSSWT VPQIPSPPTA SGLCWPKDPQ YSSDSVLFVP DISFSLIQQS QISSICLRRW RQL
101: GVRVGLEAID PGASLTSLKS DSGEKVSDTK SSSVSRKVST VPQPSNYNEV LPIEVGGVGE FPPAKVSFGG GSTDGNISQW TIDEFIGLNE FSQHYDYMEG
201: SSRADGGKLG DSDSPVLKSG EEDMEEEDDY LERVPDSSWT VPQIPSPPTA SGLCWPKDPQ YSSDSVLFVP DISFSLIQQS QISSICLRRW RQL
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.