Factsheet for Solyc07g062160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018196	Potato	nucleus	96.98	96.98
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	16.78	69.44
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	66.78	67.92
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.07	64.54
KRH21881	Soybean	nucleus	61.41	62.46
Bra035051.1-P	Field mustard	nucleus	56.71	57.88
CDX87448	Canola	nucleus	56.71	57.88
Bra008371.1-P	Field mustard	nucleus	55.37	56.7
CDY14607	Canola	nucleus	55.37	56.7
CDY11657	Canola	nucleus	56.04	56.61
CDX88458	Canola	nucleus	55.7	56.27
CDX79268	Canola	nucleus	54.36	56.25
Bra003640.1-P	Field mustard	nucleus	54.03	55.9
CDY69214	Canola	nucleus	54.03	55.9
CDY26870	Canola	nucleus	55.37	55.0
AT1G78600.2	Thale cress	nucleus	54.7	51.1
GSMUA_Achr6P21590_001	Banana	nucleus	51.01	50.67
KRH27404	Soybean	extracellular, vacuole	61.41	48.93
Solyc02g084420.2.1	Tomato	cytosol	14.09	47.73
GSMUA_Achr6P14750_001	Banana	nucleus	46.98	46.36
TraesCS7B01G006400.1	Wheat	nucleus	48.66	42.9
TraesCS7A01G108400.1	Wheat	nucleus	49.33	40.95
Os06t0152200-01	Rice	nucleus	49.33	40.83
TraesCS7D01G103300.1	Wheat	nucleus	49.66	40.77
KXG19323	Sorghum	nucleus	48.32	38.4
Solyc06g073180.2.1	Tomato	nucleus	29.87	38.2
Zm00001d036214_P001	Maize	nucleus	47.99	37.05
HORVU7Hr1G023100.2	Barley	plastid	47.99	35.57
Zm00001d045323_P004	Maize	nucleus	49.66	35.07
Solyc01g110180.2.1	Tomato	nucleus	23.83	34.98
Solyc04g081020.2.1	Tomato	nucleus	31.21	31.1
Solyc12g089240.1.1	Tomato	nucleus	30.54	27.66
Solyc01g110370.2.1	Tomato	cytosol	21.14	26.14

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000315	UniProt:K4CGP9	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336	EnsemblPlantsGene:Solyc07g062160.2	EnsemblPlants:Solyc07g062160.2.1
UniParc:UPI000276B65C	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:64968188..64973200

Molecular Weight (calculated)

32067.4 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.360

Length

298 amino acids

Sequence
(BLAST)

001: MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT
101: GVKVGLEPVD PGGISSSGTS QSIQKVSEPE SAPLSKRNAS VSLDAQFNKV LPTQVSGIED FAPTKSPFAG GSAAGSMPQW QFDEFIGLSD FNQNYGYMDD
201: GSSKADNGKL GGESDSSSIL RVEDEELDGD ECLGQVPDTS WAVPQVPSPP TASGLYWPKT YQNPFDSAVF VPDISYSPSS SLQQQPPSGT RLKRRRQC

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.