Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 | |
| Solyc12g005950.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069498 | Potato | nucleus | 97.0 | 97.0 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 73.39 | 71.55 |
| KRH23214 | Soybean | nucleus | 69.53 | 67.78 |
| KRH29616 | Soybean | nucleus | 68.24 | 66.81 |
| KRH24617 | Soybean | nucleus | 67.38 | 65.97 |
| Bra032441.1-P | Field mustard | nucleus | 62.23 | 61.97 |
| CDY06194 | Canola | nucleus | 62.23 | 61.97 |
| CDY09992 | Canola | nucleus | 62.23 | 61.7 |
| CDX86539 | Canola | nucleus | 60.94 | 58.92 |
| Bra015469.1-P | Field mustard | nucleus | 61.37 | 58.85 |
| AT2G31380.1 | Thale cress | nucleus | 60.09 | 58.82 |
| AT1G06040.1 | Thale cress | nucleus | 62.23 | 58.47 |
| Bra030635.1-P | Field mustard | nucleus | 59.66 | 57.68 |
| CDY56613 | Canola | nucleus | 60.09 | 57.61 |
| CDY10800 | Canola | nucleus | 60.09 | 57.61 |
| CDY15558 | Canola | nucleus | 59.23 | 57.5 |
| CDY19093 | Canola | nucleus | 58.8 | 57.32 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 58.37 | 57.14 |
| Bra021734.1-P | Field mustard | nucleus | 58.8 | 57.08 |
| Bra018249.1-P | Field mustard | nucleus | 58.8 | 56.38 |
| CDY15382 | Canola | nucleus | 58.37 | 56.2 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 59.23 | 54.33 |
| Zm00001d051018_P002 | Maize | extracellular | 56.22 | 51.78 |
| EES07119 | Sorghum | nucleus | 58.37 | 51.71 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 55.79 | 50.78 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 54.94 | 50.39 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 55.79 | 50.0 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 54.94 | 49.23 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.51 | 49.22 |
| EES12431 | Sorghum | nucleus | 56.22 | 48.88 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 54.08 | 48.84 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 54.51 | 48.29 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 54.94 | 47.23 |
| Solyc02g084420.2.1 | Tomato | cytosol | 17.17 | 45.45 |
| Os04t0493000-01 | Rice | cytosol | 32.62 | 41.3 |
| KRH10122 | Soybean | nucleus | 67.81 | 40.31 |
| Solyc01g110180.2.1 | Tomato | nucleus | 30.9 | 35.47 |
| Solyc07g062160.2.1 | Tomato | nucleus | 38.2 | 29.87 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.19 | 29.08 |
| Solyc04g081020.2.1 | Tomato | nucleus | 33.91 | 26.42 |
| Solyc12g089240.1.1 | Tomato | nucleus | 33.91 | 24.01 |
| Solyc01g110370.2.1 | Tomato | cytosol | 21.89 | 21.16 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EMBL:AY490242 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | UniProt:Q2VY19 | SMART:SM00336 | EnsemblPlantsGene:Solyc06g073180.2 | EnsemblPlants:Solyc06g073180.2.1 |
| UniParc:UPI0000662557 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
CONSTANS interacting protein 1 [Source:UniProtKB/TrEMBL;Acc:Q2VY19]
Coordinates
chr6:+:45089788..45093131
Molecular Weight (calculated)
25916.7 Da
IEP (calculated)
4.745
GRAVY (calculated)
-0.391
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK AQATVICCAD EAALCAKCDI EVHAANKLAS KHQRLHLQCL SNKLPPCDIC QDKAAFIFCV EDRALFCKDC DEAIHSASSL AKNHQRFLAT
101: GIRVALSSSC NKESVKNQLQ PQPPQQNSQQ VGLKMPPQQL SCITSPSWPV DDLLGFPDYE SSDKKDLLEL GEFEWLGGID LFGEQTAAEV PELSVPQSSN
201: TNIYRTTKYQ MPYKKSRIEI PDDDEYFTVP DLG
101: GIRVALSSSC NKESVKNQLQ PQPPQQNSQQ VGLKMPPQQL SCITSPSWPV DDLLGFPDYE SSDKKDLLEL GEFEWLGGID LFGEQTAAEV PELSVPQSSN
201: TNIYRTTKYQ MPYKKSRIEI PDDDEYFTVP DLG
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.