Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31380.1 | CDY12145 | AT2G32950.1 | 11226162 |
| AT2G31380.1 | CDY52540 | AT2G32950.1 | 11226162 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018249.1-P | Field mustard | nucleus | 96.3 | 96.3 |
| CDY10800 | Canola | nucleus | 96.3 | 96.3 |
| CDY19093 | Canola | nucleus | 90.53 | 92.05 |
| CDY15382 | Canola | nucleus | 90.53 | 90.91 |
| AT2G31380.1 | Thale cress | nucleus | 88.07 | 89.92 |
| CDX86539 | Canola | nucleus | 72.84 | 73.44 |
| CDY15558 | Canola | nucleus | 72.02 | 72.92 |
| CDY06194 | Canola | nucleus | 68.31 | 70.94 |
| CDY09992 | Canola | nucleus | 68.31 | 70.64 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 62.14 | 63.18 |
| Solyc06g073180.2.1 | Tomato | nucleus | 57.61 | 60.09 |
| KRH23214 | Soybean | nucleus | 58.85 | 59.83 |
| PGSC0003DMT400069498 | Potato | nucleus | 57.2 | 59.66 |
| KRH24617 | Soybean | nucleus | 58.02 | 59.24 |
| KRH29616 | Soybean | nucleus | 57.61 | 58.82 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 53.91 | 55.04 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 55.97 | 53.54 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 52.67 | 50.0 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 52.26 | 48.85 |
| Zm00001d051018_P002 | Maize | extracellular | 50.62 | 48.62 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 51.85 | 48.46 |
| EES07119 | Sorghum | nucleus | 51.03 | 47.15 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 50.21 | 45.02 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 46.91 | 44.88 |
| EES12431 | Sorghum | nucleus | 48.97 | 44.4 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 46.91 | 44.19 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 46.5 | 43.8 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 46.5 | 42.97 |
| CDX86867 | Canola | nucleus | 26.34 | 40.25 |
| CDX99534 | Canola | nucleus | 25.93 | 39.62 |
| KRH10122 | Soybean | nucleus | 58.85 | 36.48 |
| Os04t0493000-01 | Rice | cytosol | 27.16 | 35.87 |
| CDX82018 | Canola | cytosol | 24.28 | 31.55 |
| CDX72726 | Canola | cytosol | 22.22 | 30.17 |
| CDY12111 | Canola | cytosol | 22.22 | 30.0 |
| CDX90301 | Canola | cytosol | 22.22 | 30.0 |
| CDX79268 | Canola | nucleus | 34.98 | 29.51 |
| CDY11657 | Canola | nucleus | 35.39 | 29.15 |
| CDX88458 | Canola | nucleus | 35.39 | 29.15 |
| CDX87448 | Canola | nucleus | 34.98 | 29.11 |
| CDY41957 | Canola | nucleus | 25.1 | 28.77 |
| CDY69214 | Canola | nucleus | 33.74 | 28.47 |
| CDY14607 | Canola | nucleus | 33.33 | 27.84 |
| CDY26870 | Canola | nucleus | 34.16 | 27.67 |
| CDY42602 | Canola | nucleus | 24.69 | 25.64 |
| CDY12117 | Canola | nucleus | 25.1 | 25.21 |
| CDY39040 | Canola | nucleus | 30.45 | 25.17 |
| CDX90306 | Canola | nucleus | 24.69 | 24.9 |
| CDY13564 | Canola | nucleus | 30.04 | 24.09 |
| CDY22402 | Canola | plastid | 15.64 | 23.6 |
| CDX73178 | Canola | nucleus | 30.86 | 23.29 |
| CDX85903 | Canola | nucleus | 30.45 | 23.2 |
| CDX68124 | Canola | nucleus | 30.45 | 23.2 |
| CDY47514 | Canola | nucleus | 30.45 | 23.05 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:A0A078J0K2 | UniProt:A0A078J0K2 | EnsemblPlants:CDY56613 | ProteinID:CDY56613 |
| ProteinID:CDY56613.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00019791001 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | SMART:SM00336 | UniParc:UPI000189D256 | InterPro:Znf_B-box | SEG:seg |
Description
BnaCnng30730DBnaCnng30730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0K2]
Coordinates
chrLK033504:+:26668..27985
Molecular Weight (calculated)
27135.9 Da
IEP (calculated)
4.916
GRAVY (calculated)
-0.497
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATLICCAD EAALCAKCDI EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEGTHAPNTR SANHQRFLAT
101: GIRVALSSAS CSKEVEMNHF DPPNQQITSK PPTQQPAAPS PPWAGDEFFR YSDLECSNKK EQLDLGELDW LAEMGFFGDQ PDQEALPAAE VPELSASHVA
201: HVHSYNRPMN SNVSNKKPRL EIRYDDDEEH FLVPDLGLNY KRN
101: GIRVALSSAS CSKEVEMNHF DPPNQQITSK PPTQQPAAPS PPWAGDEFFR YSDLECSNKK EQLDLGELDW LAEMGFFGDQ PDQEALPAAE VPELSASHVA
201: HVHSYNRPMN SNVSNKKPRL EIRYDDDEEH FLVPDLGLNY KRN
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Arabidopsis Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.