Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86867 | Canola | nucleus | 98.11 | 98.11 |
| AT4G10240.1 | Thale cress | nucleus | 79.87 | 78.4 |
| VIT_18s0089g01280.t01 | Wine grape | nucleus | 43.4 | 33.66 |
| CDY41957 | Canola | nucleus | 38.36 | 28.77 |
| CDY12111 | Canola | cytosol | 31.45 | 27.78 |
| CDX90301 | Canola | cytosol | 31.45 | 27.78 |
| CDX72726 | Canola | cytosol | 30.82 | 27.37 |
| CDY69214 | Canola | nucleus | 49.06 | 27.08 |
| CDX87448 | Canola | nucleus | 49.69 | 27.05 |
| CDY06194 | Canola | nucleus | 39.62 | 26.92 |
| CDY15382 | Canola | nucleus | 40.88 | 26.86 |
| CDY09992 | Canola | nucleus | 39.62 | 26.81 |
| CDY11657 | Canola | nucleus | 49.69 | 26.78 |
| CDX88458 | Canola | nucleus | 49.69 | 26.78 |
| CDX82018 | Canola | cytosol | 31.45 | 26.74 |
| CDX79268 | Canola | nucleus | 48.43 | 26.74 |
| CDY42602 | Canola | nucleus | 38.99 | 26.5 |
| CDY12117 | Canola | nucleus | 40.25 | 26.45 |
| CDY19093 | Canola | nucleus | 39.62 | 26.36 |
| CDX90306 | Canola | nucleus | 39.62 | 26.14 |
| CDX86539 | Canola | nucleus | 39.62 | 26.14 |
| CDY14607 | Canola | nucleus | 47.8 | 26.12 |
| CDY10800 | Canola | nucleus | 39.62 | 25.93 |
| CDY56613 | Canola | nucleus | 39.62 | 25.93 |
| CDY15558 | Canola | nucleus | 38.36 | 25.42 |
| CDY26870 | Canola | nucleus | 47.8 | 25.33 |
| CDY22402 | Canola | plastid | 22.01 | 21.74 |
| CDY39040 | Canola | nucleus | 38.36 | 20.75 |
| CDY13564 | Canola | nucleus | 38.99 | 20.46 |
| CDX73178 | Canola | nucleus | 39.62 | 19.57 |
| CDX85903 | Canola | nucleus | 38.99 | 19.44 |
| CDX68124 | Canola | nucleus | 38.99 | 19.44 |
| CDY47514 | Canola | nucleus | 38.99 | 19.31 |
Protein Annotations
| EnsemblPlants:CDX99534 | EnsemblPlantsGene:GSBRNA2T00107950001 | Gene3D:3.30.40.200 | GO:A0A078EFH2 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDX99534 | ProteinID:CDX99534.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0004EB2608 | MapMan:15.5.1.1 | : | : |
Description
BnaC09g24580D
Coordinates
chrLK031911:-:521315..521868
Molecular Weight (calculated)
17310.2 Da
IEP (calculated)
5.549
GRAVY (calculated)
-0.415
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCEVCEK AEAEVLCCSD EAALCKPCDI TVHEANKLFQ RHHRVPLQKP SSTTSSAAPL CDICKERKGY FFCLDDRALL CNDCDGAIHI CSSHQRFLLS
101: GVQASDQSLT KSSGCSTNLS SETYHIQSKA SLNSQYSSEE NEAGNSGETD KTPSVILSP
101: GVQASDQSLT KSSGCSTNLS SETYHIQSKA SLNSQYSSEE NEAGNSGETD KTPSVILSP
001: MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
101: LSGVQVSDQS LTENSECSTS FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
Arabidopsis Description
BBX23Bbx23 [Source:UniProtKB/TrEMBL;Acc:A0A178UTH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.