Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15558 | Canola | nucleus | 96.68 | 97.08 |
| AT1G06040.1 | Thale cress | nucleus | 89.21 | 86.69 |
| CDY06194 | Canola | nucleus | 83.4 | 85.9 |
| CDY09992 | Canola | nucleus | 82.57 | 84.68 |
| CDY19093 | Canola | nucleus | 74.27 | 74.9 |
| CDY15382 | Canola | nucleus | 73.44 | 73.14 |
| CDY56613 | Canola | nucleus | 73.44 | 72.84 |
| CDY10800 | Canola | nucleus | 73.44 | 72.84 |
| KRH24617 | Soybean | nucleus | 63.9 | 64.71 |
| KRH29616 | Soybean | nucleus | 63.49 | 64.29 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 63.49 | 64.02 |
| KRH23214 | Soybean | nucleus | 61.83 | 62.34 |
| PGSC0003DMT400069498 | Potato | nucleus | 60.17 | 62.23 |
| Solyc06g073180.2.1 | Tomato | nucleus | 58.92 | 60.94 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 58.51 | 59.24 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 58.92 | 55.91 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 55.6 | 52.34 |
| Zm00001d051018_P002 | Maize | extracellular | 54.77 | 52.17 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 55.6 | 51.54 |
| EES07119 | Sorghum | nucleus | 56.02 | 51.33 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 55.19 | 51.15 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 53.11 | 50.39 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.94 | 50.39 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 53.11 | 49.61 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 53.11 | 48.67 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 54.36 | 48.34 |
| EES12431 | Sorghum | nucleus | 53.53 | 48.13 |
| CDX86867 | Canola | nucleus | 26.56 | 40.25 |
| CDX99534 | Canola | nucleus | 26.14 | 39.62 |
| Os04t0493000-01 | Rice | cytosol | 29.88 | 39.13 |
| KRH10122 | Soybean | nucleus | 61.41 | 37.76 |
| CDY41957 | Canola | nucleus | 28.63 | 32.55 |
| CDY12111 | Canola | cytosol | 22.82 | 30.56 |
| CDX79268 | Canola | nucleus | 36.1 | 30.21 |
| CDX72726 | Canola | cytosol | 22.41 | 30.17 |
| CDY12117 | Canola | nucleus | 30.29 | 30.17 |
| CDX90301 | Canola | cytosol | 22.41 | 30.0 |
| CDX82018 | Canola | cytosol | 23.24 | 29.95 |
| CDX90306 | Canola | nucleus | 29.88 | 29.88 |
| CDX88458 | Canola | nucleus | 36.1 | 29.49 |
| CDY11657 | Canola | nucleus | 36.1 | 29.49 |
| CDY42602 | Canola | nucleus | 28.63 | 29.49 |
| CDX87448 | Canola | nucleus | 35.68 | 29.45 |
| CDY14607 | Canola | nucleus | 35.27 | 29.21 |
| CDY69214 | Canola | nucleus | 34.44 | 28.82 |
| CDY26870 | Canola | nucleus | 35.68 | 28.67 |
| CDY39040 | Canola | nucleus | 34.85 | 28.57 |
| CDY13564 | Canola | nucleus | 35.68 | 28.38 |
| CDY47514 | Canola | nucleus | 35.27 | 26.48 |
| CDX73178 | Canola | nucleus | 34.85 | 26.09 |
| CDX85903 | Canola | nucleus | 34.44 | 26.02 |
| CDX68124 | Canola | nucleus | 34.44 | 26.02 |
| CDY22402 | Canola | plastid | 14.94 | 22.36 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | ProteinID:AEW46252.1 | EnsemblPlants:CDX86539 | ProteinID:CDX86539 | ProteinID:CDX86539.1 |
| ncoils:Coil | GO:G9HRU7 | UniProt:G9HRU7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00145155001 | InterPro:IPR000315 | PFAM:PF00643 |
| PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | SMART:SM00336 | UniParc:UPI000243599B | InterPro:Znf_B-box |
Description
BnaC08g01640DBnaC08g01640D protein [Source:UniProtKB/TrEMBL;Acc:G9HRU7]
Coordinates
chrLK031846:+:490760..491967
Molecular Weight (calculated)
26861.6 Da
IEP (calculated)
5.773
GRAVY (calculated)
-0.485
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLNSL ATKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANTR SANHQRFLAT
101: GIKVALSSTS CSSKNQPEPS NNQQKAKEIP AKTLNQQQPS SATPLPWAVD DFFHFSDPEC TDKQKGQLGL GELEWFSDMG FFGDQISQES LPAAEVPELS
201: VSHLGHVHSY RPMKSNVSYK KPRLEFRDDD EEEHFIVPDL G
101: GIKVALSSTS CSSKNQPEPS NNQQKAKEIP AKTLNQQQPS SATPLPWAVD DFFHFSDPEC TDKQKGQLGL GELEWFSDMG FFGDQISQES LPAAEVPELS
201: VSHLGHVHSY RPMKSNVSYK KPRLEFRDDD EEEHFIVPDL G
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.