Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032441.1-P | Field mustard | nucleus | 95.74 | 96.15 |
| CDY06194 | Canola | nucleus | 94.89 | 95.3 |
| CDX86539 | Canola | nucleus | 84.68 | 82.57 |
| CDY15558 | Canola | nucleus | 83.83 | 82.08 |
| AT1G06040.1 | Thale cress | nucleus | 82.98 | 78.63 |
| CDY19093 | Canola | nucleus | 70.64 | 69.46 |
| CDY15382 | Canola | nucleus | 71.06 | 69.01 |
| CDY56613 | Canola | nucleus | 70.64 | 68.31 |
| CDY10800 | Canola | nucleus | 69.79 | 67.49 |
| KRH29616 | Soybean | nucleus | 63.83 | 63.03 |
| KRH24617 | Soybean | nucleus | 63.83 | 63.03 |
| PGSC0003DMT400069498 | Potato | nucleus | 61.7 | 62.23 |
| Solyc06g073180.2.1 | Tomato | nucleus | 61.7 | 62.23 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 62.98 | 61.92 |
| KRH23214 | Soybean | nucleus | 62.55 | 61.51 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 56.17 | 55.46 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 55.32 | 51.18 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 55.32 | 50.78 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 55.32 | 50.0 |
| Zm00001d051018_P002 | Maize | extracellular | 53.62 | 49.8 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 54.89 | 49.62 |
| EES07119 | Sorghum | nucleus | 54.89 | 49.05 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.34 | 47.67 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 51.49 | 47.64 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 51.49 | 46.9 |
| EES12431 | Sorghum | nucleus | 52.77 | 46.27 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 51.49 | 46.01 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 52.77 | 45.76 |
| CDX86867 | Canola | nucleus | 27.23 | 40.25 |
| CDX99534 | Canola | nucleus | 26.81 | 39.62 |
| KRH10122 | Soybean | nucleus | 61.7 | 36.99 |
| Os04t0493000-01 | Rice | cytosol | 28.09 | 35.87 |
| CDY41957 | Canola | nucleus | 28.94 | 32.08 |
| CDY12117 | Canola | nucleus | 31.06 | 30.17 |
| CDY42602 | Canola | nucleus | 29.79 | 29.91 |
| CDX90306 | Canola | nucleus | 30.64 | 29.88 |
| CDX82018 | Canola | cytosol | 22.98 | 28.88 |
| CDX79268 | Canola | nucleus | 35.32 | 28.82 |
| CDX72726 | Canola | cytosol | 21.7 | 28.49 |
| CDX90301 | Canola | cytosol | 21.7 | 28.33 |
| CDY12111 | Canola | cytosol | 21.7 | 28.33 |
| CDX88458 | Canola | nucleus | 35.32 | 28.14 |
| CDY11657 | Canola | nucleus | 35.32 | 28.14 |
| CDX87448 | Canola | nucleus | 34.89 | 28.08 |
| CDY14607 | Canola | nucleus | 34.04 | 27.49 |
| CDY69214 | Canola | nucleus | 33.62 | 27.43 |
| CDY26870 | Canola | nucleus | 34.47 | 27.0 |
| CDY39040 | Canola | nucleus | 33.62 | 26.87 |
| CDY13564 | Canola | nucleus | 34.47 | 26.73 |
| CDY47514 | Canola | nucleus | 34.04 | 24.92 |
| CDX73178 | Canola | nucleus | 34.04 | 24.84 |
| CDX85903 | Canola | nucleus | 33.62 | 24.76 |
| CDX68124 | Canola | nucleus | 33.62 | 24.76 |
| CDY22402 | Canola | plastid | 14.47 | 21.12 |
Protein Annotations
| EnsemblPlants:CDY09992 | EnsemblPlantsGene:GSBRNA2T00031771001 | Gene3D:3.30.40.200 | GO:A0A078FAD4 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDY09992 | ProteinID:CDY09992.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0004EE2D73 | UniProt:A0A078FAD4 | MapMan:15.5.1.1 | : |
Description
BnaC08g44590DBnaC08g44590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAD4]
Coordinates
chrLK032000:+:396259..398201
Molecular Weight (calculated)
26175.6 Da
IEP (calculated)
4.633
GRAVY (calculated)
-0.463
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLDSL PTKFPRCDIC QEKAAFIFCV EDRALLCKDC DESIHLANSR SANHQRLLAT
101: GIKVALSSSS CSKETEKDHS EEIPAKTLSQ KQPSSSATTP LPWAVDDLFH FSEFTDKKGE LDLGEFEWFS DMGFFGDQTL PAAEVPELSV SHMGQVHSYR
201: PMKSNVSYKK PRLEIRADDD DDDDDEEHFI VPDLG
101: GIKVALSSSS CSKETEKDHS EEIPAKTLSQ KQPSSSATTP LPWAVDDLFH FSEFTDKKGE LDLGEFEWFS DMGFFGDQTL PAAEVPELSV SHMGQVHSYR
201: PMKSNVSYKK PRLEIRADDD DDDDDEEHFI VPDLG
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.