Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010718.1-P | Field mustard | cytosol | 98.33 | 98.33 |
| CDX90301 | Canola | cytosol | 97.78 | 97.78 |
| CDX72726 | Canola | cytosol | 91.11 | 91.62 |
| Solyc02g084420.2.1 | Tomato | cytosol | 41.11 | 84.09 |
| CDY22402 | Canola | plastid | 75.0 | 83.85 |
| CDX82018 | Canola | cytosol | 78.89 | 75.94 |
| AT4G38960.3 | Thale cress | cytosol | 93.89 | 74.78 |
| VIT_03s0038g00690.t01 | Wine grape | cytosol | 69.44 | 59.52 |
| VIT_04s0023g03030.t01 | Wine grape | cytosol | 60.0 | 58.7 |
| PGSC0003DMT400008044 | Potato | cytosol | 67.78 | 57.55 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 61.11 | 56.99 |
| PGSC0003DMT400009328 | Potato | cytosol | 57.22 | 56.59 |
| KRH29344 | Soybean | nucleus | 64.44 | 54.72 |
| KRH24373 | Soybean | nucleus | 64.44 | 54.72 |
| GSMUA_Achr10P... | Banana | cytosol | 61.67 | 53.37 |
| Zm00001d021278_P001 | Maize | cytosol | 60.0 | 52.43 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 61.11 | 52.38 |
| Os09t0527900-01 | Rice | cytosol | 61.11 | 52.13 |
| EER97079 | Sorghum | cytosol | 60.0 | 51.18 |
| Solyc01g110370.2.1 | Tomato | cytosol | 67.22 | 50.21 |
| TraesCS5B01G317700.1 | Wheat | cytosol | 58.33 | 49.76 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 57.78 | 49.29 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 57.78 | 49.29 |
| GSMUA_Achr1P07770_001 | Banana | cytosol | 63.33 | 47.11 |
| HORVU5Hr1G081190.1 | Barley | cytosol, nucleus, plastid | 57.78 | 37.82 |
| Zm00001d006198_P001 | Maize | cytosol | 50.0 | 35.43 |
| CDX86867 | Canola | nucleus | 27.78 | 31.45 |
| CDX99534 | Canola | nucleus | 27.78 | 31.45 |
| CDY41957 | Canola | nucleus | 28.33 | 24.06 |
| CDX86539 | Canola | nucleus | 30.56 | 22.82 |
| CDY42602 | Canola | nucleus | 29.44 | 22.65 |
| CDY10800 | Canola | nucleus | 30.56 | 22.63 |
| CDY19093 | Canola | nucleus | 30.0 | 22.59 |
| CDY15558 | Canola | nucleus | 30.0 | 22.5 |
| CDY56613 | Canola | nucleus | 30.0 | 22.22 |
| CDY06194 | Canola | nucleus | 28.89 | 22.22 |
| CDY15382 | Canola | nucleus | 29.44 | 21.9 |
| CDY09992 | Canola | nucleus | 28.33 | 21.7 |
| CDX90306 | Canola | nucleus | 28.89 | 21.58 |
| CDY12117 | Canola | nucleus | 28.89 | 21.49 |
| CDX79268 | Canola | nucleus | 32.78 | 20.49 |
| CDY69214 | Canola | nucleus | 32.78 | 20.49 |
| CDX88458 | Canola | nucleus | 33.33 | 20.34 |
| CDY11657 | Canola | nucleus | 33.33 | 20.34 |
| CDX87448 | Canola | nucleus | 32.78 | 20.21 |
| CDY14607 | Canola | nucleus | 31.67 | 19.59 |
| CDY26870 | Canola | nucleus | 31.67 | 19.0 |
| CDY39040 | Canola | nucleus | 29.44 | 18.03 |
| CDY13564 | Canola | nucleus | 30.0 | 17.82 |
| CDY47514 | Canola | nucleus | 31.11 | 17.45 |
| CDX73178 | Canola | nucleus | 31.11 | 17.39 |
| CDX85903 | Canola | nucleus | 30.56 | 17.24 |
| CDX68124 | Canola | nucleus | 30.56 | 17.24 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:A0A078FFV4 | UniProt:A0A078FFV4 | EnsemblPlants:CDY12111 | ProteinID:CDY12111 |
| ProteinID:CDY12111.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00061090001 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF5 | SMART:SM00336 | UniParc:UPI000189D255 | InterPro:Znf_B-box | : | : |
Description
BnaC03g60270DBnaC03g60270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFV4]
Coordinates
chrLK032017:+:586075..587992
Molecular Weight (calculated)
19770.2 Da
IEP (calculated)
5.929
GRAVY (calculated)
-0.582
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MRILCDACEN AAAIVFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDRPKQ NNARDNMQNQ RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHEPAG VGPFKRESEK
101: IEFPGDRPKQ NNARDNMQNQ RVSASANGEA NGKTDDEMID LNANPQRVHE PSSNNQGIDV NNTNNHEPAG VGPFKRESEK
001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
Arabidopsis Description
B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.