CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021278_P001	Maize	cytosol	92.42	94.66
Os09t0527900-01	Rice	cytosol	89.1	89.1
Solyc02g084420.2.1	Tomato	cytosol	35.55	85.23
TraesCS5D01G323400.1	Wheat	cytosol	80.09	80.09
TraesCS5B01G317700.1	Wheat	cytosol	79.15	79.15
TraesCS5A01G317100.1	Wheat	cytosol	79.15	79.15
GSMUA_Achr10P...	Banana	cytosol	70.62	71.63
VIT_04s0023g03030.t01	Wine grape	cytosol	58.77	67.39
PGSC0003DMT400009328	Potato	cytosol	56.87	65.93
CDX82018	Canola	cytosol	57.35	64.71
Bra031180.1-P	Field mustard	cytosol	56.87	63.83
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.18	62.79
VIT_03s0038g00690.t01	Wine grape	cytosol	62.09	62.38
Bra010718.1-P	Field mustard	cytosol	52.13	61.11
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	79.15	60.73
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	55.45	60.62
CDX72726	Canola	cytosol	51.18	60.34
CDY12111	Canola	cytosol	51.18	60.0
CDX90301	Canola	cytosol	51.18	60.0
Bra033588.1-P	Field mustard	cytosol	51.18	59.34
PGSC0003DMT400008044	Potato	cytosol	59.24	58.96
KRH29344	Soybean	nucleus	58.29	58.02
KRH24373	Soybean	nucleus	57.82	57.55
Zm00001d006198_P001	Maize	cytosol	69.19	57.48
GSMUA_Achr1P07770_001	Banana	cytosol	65.4	57.02
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	55.45	55.71
CDY22402	Canola	plastid	41.23	54.04
Solyc01g110370.2.1	Tomato	cytosol	58.29	51.04
AT4G38960.3	Thale cress	cytosol	52.61	49.12
EES12431	Sorghum	nucleus	27.96	22.01
EES15831	Sorghum	nucleus	25.12	21.63
OQU82040	Sorghum	nucleus	27.01	21.51
EES07119	Sorghum	nucleus	26.54	21.29
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.38	18.45
EES07539	Sorghum	nucleus	25.59	18.31
EES02283	Sorghum	nucleus	28.91	17.33
EER90373	Sorghum	cytosol	23.22	16.07
KXG19323	Sorghum	nucleus	27.49	15.47

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:8054891	UniProt:C5X660	EnsemblPlants:EER97079	ProteinID:EER97079
ProteinID:EER97079.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791
GO:GO:0009987	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF5
SMART:SM00336	EnsemblPlantsGene:SORBI_3002G273300	UniParc:UPI0001A83978	RefSeq:XP_002460558.1	InterPro:Znf_B-box	:

Description

hypothetical protein

Coordinates

chr2:+:65643581..65647010

Molecular Weight (calculated)

23209.3 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.703

Length

211 amino acids

Sequence
(BLAST)

001: MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR
101: VEFPGDKPGH MDDVPMETVP METKDPENQR DQKKAPKEQM ANHHNGDHPA CDGNCDDQGN IDSKMIDLNM RPVRTHGQGS NSQTQGVDLS VNNHDSPGVV
201: PTSNSERDAS K

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.