CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	KXG31183	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036418_P001	Maize	nucleus	75.41	85.5
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	80.66	69.3
HORVU7Hr1G091180.1	Barley	nucleus	58.03	64.36
TraesCS7D01G379900.1	Wheat	nucleus	59.67	63.86
TraesCS7B01G286300.1	Wheat	nucleus	60.33	59.16
Os06t0713000-01	Rice	nucleus	59.02	58.44
TraesCS7A01G383400.3	Wheat	nucleus	59.34	57.83
GSMUA_Achr11P...	Banana	nucleus	28.52	47.03
GSMUA_Achr11P...	Banana	cytosol	30.16	46.46
CDY41957	Canola	nucleus	27.87	40.09
OQU82040	Sorghum	nucleus	33.77	38.87
Bra011879.1-P	Field mustard	nucleus	30.16	38.49
Solyc01g110180.2.1	Tomato	nucleus	25.25	37.93
CDY42602	Canola	nucleus	28.85	37.61
CDY12117	Canola	nucleus	29.51	37.19
AT4G39070.1	Thale cress	cytosol	29.18	36.78
KRH51757	Soybean	nucleus	29.51	36.73
Bra010713.1-P	Field mustard	nucleus	28.85	36.51
CDX90306	Canola	nucleus	28.85	36.51
EES07539	Sorghum	nucleus	35.08	36.27
KRH51476	Soybean	nucleus	27.54	36.05
KRH17384	Soybean	nucleus	31.8	35.14
KRH61078	Soybean	nucleus	30.49	34.96
VIT_18s0001g13520.t01	Wine grape	nucleus	34.1	34.32
PGSC0003DMT400079507	Potato	nucleus	25.57	30.95
PGSC0003DMT400009514	Potato	nucleus	29.51	30.2
Bra008204.1-P	Field mustard	nucleus	29.84	30.13
VIT_03s0038g00340.t01	Wine grape	nucleus	29.84	30.13
Solyc12g089240.1.1	Tomato	nucleus	32.13	29.79
Solyc04g081020.2.1	Tomato	nucleus	29.18	29.77
CDY13564	Canola	nucleus	29.51	29.7
CDY39040	Canola	nucleus	28.52	29.59
CDX68124	Canola	nucleus	30.49	29.15
PGSC0003DMT400075652	Potato	nucleus	31.48	29.09
CDY47514	Canola	nucleus	30.49	28.97
Bra015835.1-P	Field mustard	nucleus	30.49	28.97
CDX73178	Canola	nucleus	30.49	28.88
Bra003748.1-P	Field mustard	nucleus	30.16	28.84
CDX85903	Canola	nucleus	30.16	28.84
KRH29378	Soybean	nucleus	27.21	28.82
KRH05902	Soybean	nucleus	30.82	28.75
AT1G75540.1	Thale cress	nucleus	29.84	27.49
EES12431	Sorghum	nucleus	23.61	26.87
KRH24393	Soybean	nucleus	17.7	26.34
KRH60788	Soybean	nucleus	27.54	26.33
EES07119	Sorghum	nucleus	22.62	26.24
EES15831	Sorghum	nucleus	18.69	23.27
EER97079	Sorghum	cytosol	16.07	23.22
EES02283	Sorghum	nucleus	25.25	21.88
KXG19323	Sorghum	nucleus	25.9	21.07
EES17867	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	22.95	20.83

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	UniProt:C5Z1S6	EnsemblPlants:EER90373	ProteinID:EER90373	ProteinID:EER90373.1
GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987
GO:GO:0046872	InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF11
SMART:SM00336	EnsemblPlantsGene:SORBI_3010G262200	UniParc:UPI0001A8981B	RefSeq:XP_002439006.1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:59870680..59871779

Molecular Weight (calculated)

31884.9 Da

IEP (calculated)

4.449

GRAVY (calculated)

-0.209

Length

305 amino acids

Sequence
(BLAST)

001: MQVRCDFCGA APAAVLCWAD EAALCSACDR RVHRANKLVH KHRRIPLVQP ASGNVSDADA DAAAPLCDVC KERRGLVFCV EDRAILCPDC DDPIHSANDL
101: TAKHTRFLLV GAKLSAELVD QAPASPDDDD DDDDACGRDT RAAAEPDAVP ALGAQGSCAA KASALESGSV GGGSSISDYL TNICPGWRVD DLLFDDPAFS
201: AASQKASGYS DDGHEQVPSL DADLFDVVAG GRPGKRGGVW STGAGALGFD KATPASVVAV PTQGFVREMS WNSDSDSDVF AVPEFPHPPP AKKARPAPAS
301: TFWCF

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.