Factsheet for VIT_03s0038g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110180.2.1	Tomato	nucleus	34.44	51.23
Zm00001d017412_P001	Maize	nucleus	23.84	50.7
VIT_18s0001g13520.t01	Wine grape	nucleus	49.34	49.17
GSMUA_Achr9P20930_001	Banana	cytosol	30.13	48.92
GSMUA_Achr11P...	Banana	nucleus	29.8	48.65
CDY41957	Canola	nucleus	33.44	47.64
CDY42602	Canola	nucleus	36.42	47.01
GSMUA_Achr4P05180_001	Banana	cytosol	31.46	46.8
CDY12117	Canola	nucleus	37.09	46.28
Bra010713.1-P	Field mustard	nucleus	36.76	46.06
CDX90306	Canola	nucleus	36.76	46.06
Bra011879.1-P	Field mustard	nucleus	36.42	46.03
AT4G39070.1	Thale cress	cytosol	36.76	45.87
GSMUA_Achr11P...	Banana	cytosol	29.14	44.44
KRH51476	Soybean	nucleus	34.11	44.21
TraesCS6B01G285200.1	Wheat	nucleus	34.11	43.28
TraesCS6D01G221700.1	Wheat	nucleus	33.77	42.86
TraesCS6A01G239300.1	Wheat	nucleus	33.44	42.8
PGSC0003DMT400079507	Potato	nucleus	35.43	42.46
Os04t0540200-01	Rice	nucleus	35.1	42.4
GSMUA_AchrUn_...	Banana	nucleus	37.42	40.65
TraesCS2A01G388500.1	Wheat	nucleus	34.11	39.92
TraesCS2D01G386300.1	Wheat	nucleus	34.44	39.69
Zm00001d025957_P001	Maize	nucleus	33.44	39.45
GSMUA_Achr11P...	Banana	nucleus	34.11	39.31
Zm00001d002806_P001	Maize	nucleus	33.44	39.15
TraesCS2B01G406600.2	Wheat	nucleus	34.11	38.87
Os02t0646200-01	Rice	nucleus	34.44	38.66
OQU82040	Sorghum	nucleus	33.77	38.49
Zm00001d051309_P001	Maize	nucleus	33.44	36.46
KRH29378	Soybean	nucleus	34.77	36.46
KRH60788	Soybean	nucleus	37.09	35.11
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	32.78	34.74
EES07539	Sorghum	nucleus	33.44	34.24
HORVU7Hr1G091180.1	Barley	nucleus	30.46	33.45
VIT_05s0102g00750.t01	Wine grape	nucleus	25.17	31.8
TraesCS7D01G379900.1	Wheat	nucleus	29.47	31.23
KRH24393	Soybean	nucleus	21.19	31.22
Os06t0713000-01	Rice	nucleus	30.79	30.19
Zm00001d036418_P001	Maize	nucleus	26.82	30.11
EER90373	Sorghum	cytosol	30.13	29.84
VIT_18s0089g01280.t01	Wine grape	nucleus	20.2	29.76
TraesCS7B01G286300.1	Wheat	nucleus	30.13	29.26
TraesCS7A01G383400.3	Wheat	nucleus	30.13	29.07
GSMUA_Achr1P07740_001	Banana	nucleus	36.09	27.81
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.49	27.3
VIT_04s0023g03030.t01	Wine grape	cytosol	16.56	27.17
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	32.12	25.33
VIT_03s0038g00690.t01	Wine grape	cytosol	17.22	24.76
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	28.81	24.51

Protein Annotations

EntrezGene:100241912	wikigene:100241912	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:CCB60716	ProteinID:CCB60716.1
UniProt:F6I1A0	EMBL:FN596508	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	EntrezGene:LOC100241912	wikigene:LOC100241912	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	SMART:SM00336	UniParc:UPI0001982CA3	ArrayExpress:VIT_03s0038g00340
EnsemblPlantsGene:VIT_03s0038g00340	EnsemblPlants:VIT_03s0038g00340.t01	RefSeq:XP_002274649	RefSeq:XP_002274649.1	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chr3:+:310992..312241

Molecular Weight (calculated)

33373.1 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.551

Length

302 amino acids

Sequence
(BLAST)

001: MKIQCSFCSK EEASVFCTAD EAPLCDICDR QVHHANKLAG KHKRYSLLRP SDKDFPSCDL CQDKRAFLFC KEDRAILCRE CDVSIHKANE HTRKHYRFLL
101: TGVKLSASAS EYPISASSSS PSTIDSETKP SKSSTKRPTS VSADIFCNTA IGAEIKPSKT STKRPTSVSA GISNPTVKTA PAAASYKRDH DNQSISEYLM
201: ETLPGWRVDD FLDPSSGFSE FPDHGVGTHL SSFPYEDFAV WVPQDTPQFN HLPLYIPQTG GGNGLKASEE ANTVKVSRKR IDDGFTVPEI STLPLKKSRN
301: LW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.