Factsheet for VIT_18s0089g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99534	Canola	nucleus	33.66	43.4
CDX86867	Canola	nucleus	33.17	42.77
AT4G10240.1	Thale cress	nucleus	32.2	40.74
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.37	31.74
VIT_05s0102g00750.t01	Wine grape	nucleus	36.1	30.96
VIT_04s0023g03030.t01	Wine grape	cytosol	22.44	25.0
VIT_03s0038g00690.t01	Wine grape	cytosol	23.41	22.86
VIT_18s0001g13520.t01	Wine grape	nucleus	31.71	21.45
VIT_03s0038g00340.t01	Wine grape	nucleus	29.76	20.2

Protein Annotations

EntrezGene:100246452	wikigene:100246452	EntrezGene:109121578	MapMan:15.5.1.1	Gene3D:3.30.40.200	UniProt:A5BZK6
EMBL:AM476863	ProteinID:CAN72879	ProteinID:CAN72879.1	ProteinID:CBI16959	ProteinID:CBI16959.3	EMBL:FN594956
GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987
GO:GO:0046872	InterPro:IPR000315	EntrezGene:LOC100246452	wikigene:LOC100246452	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	SMART:SM00336	SUPFAM:SSF57845	UniParc:UPI000152203D	ArrayExpress:VIT_18s0089g01280
EnsemblPlantsGene:VIT_18s0089g01280	EnsemblPlants:VIT_18s0089g01280.t01	RefSeq:XP_002263859	RefSeq:XP_002263859.1	RefSeq:XP_019071822.1	InterPro:Znf_B-box

Description

No Description!

Coordinates

chr18:+:29194471..29196480

Molecular Weight (calculated)

22813.7 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.439

Length

205 amino acids

Sequence
(BLAST)

001: MKIPCDICGN VEAEVLCSAD EAVLCWGCDE RVHTANKLSQ KHQRVPLLKH PPSTSSSQLP PCDICQEKSG YFFCLEDRAL LCKNCDVSTH STNSYVSSHR
101: RFVISGIKVA LQSVTNNYRT GCNSRTYPLD MPNSNSSSVN FPMDREKKPE MTTEVASTSS DMVAMFSGEI HLATGPEWTL DEILGSNDFD YYEFSDMGQS
201: RISSQ

Best Arabidopsis Sequence Match ( AT1G78600.2 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.